LOC113530483


Basic Information

Item Value
gene id LOC113530483
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12143633 ~ 12150945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU300415
CCTGCAGCAGCATCTGTGCTTCATAACATGCAGGAAGAAGTTAACTTACTCAACAAGGATTGCTGACTCCAAGGATTTTAAAAGGTTGCATGCAATAAAGGTTCCAGAAGGGGGTTTTGGACTTTCCAAATATTGTACACCTATACTGAGACCATGAGCAGTGTGAACTCTGCTGCTTGTCTGCTGGCAAAGAATCACTTTTACCAGAATATCAGTCCTACCAACAAAATACAGCCTGTGTACAGTTTCCCTGGAAGTCTGTCACAAGCAAGACAAAGGCAAGTGACTGTCTGGAAAACTGCCTCCTTGCATCAAGGTTTGCCAGGACAGGAGCCCAGACCATGGGTATTAAGTTTGGTTTGGAAACGTCCATTATCCAACCCGGCCTCATCCAAAAGGCTAGGTTCTGCTGACCGTGTGATCAAATAGACATCTGAACTACACCTTGTCAAAAGACACGTAACATTCCCTGAGCCACAGCATATTCTTTCCCTTTTGAAACTCCTAACCCACTAGAGATTGGGTTTAAAGACTTGATCCAGCTGATCTAGACCCCATGAATAGTTTCCTAGCAGTTCTACctgtaaatattaaactatTTCATTTGTCCAGGAAGATTCAAGAAAGAAAGGACCTGCAGTTGTTTTGTGGCATGATGCATTCCCCTAATTGCTTCTCATTTTTCCCCAAAGAGCGAAAGAGCATCTCTTGTGTTCTCCTTAACCCTTACTGTAGGGAGTGTGTGTCCTCATTCCACAGCGCCCAATCAGAGCTTTACCTGGTCTCCCCAGCACAGACTTGTTGCCAAGCACAGGGGAAGAGAGACTGAATGAAAAGGATAGTGTCAGCGCACTAGACAAAGCCTTTTCCATGAACACAACCATCAGGGCTCAGTGACCCGAAAATATGCAAACACATGAGGGGAAAAAGCATGCACTTTATGAGAGCCGTGTTCAAAAtctttaaatggataaatggtGAGGTCAGGTTCTATTTTCTCAAGCACATTAGATCAGCACATTCTGTCATGCAAATCTTTTATAAAAGCAGAGtcttctttttgtatttttctgctcaaatgtgaaatgaaaagcTCAGTCCTTTTCCCATCTTAATTATATCACACAGTCTGGATCAGCATTAGTGGGCTTCCCTCTCACTCAAATGAATGTCTCTAGACTTGTTTACTTTTCCAAAAGCTTCATGCTGTTTTTCCAAAGTGTGCAATGTGATTCAAAAGGAAGTTTGCACAACGGAATGTACACAGAAGACCCACTCAACCTGAATTAACATGCCAGTTACACAACAGCTCCAGATCAGCTCTAAAAGCATGGCAGGAATAAGGGATGGCTGTATCCTTTTTCCTTAGATACTCTGAATAAACACATTGATAGAGGTCATTACTCTGGAATAAGATGTGAAAAGCTGTGTTAACAAGCCAAAAATAGGCTTACACTGAAGGAATAAACCAGCAATGAAAATGACGCAAAGTATTCCT
>XR_003403159.2
GCTGGGGTGTCTGGCATCTGGAGGATTCCTGAGTGGAAGGGGTCTATATAAAGATCCTGGTGGCTTGTTATGTTGGTAGATTTCCCTGCAGCAGCATCTGTGCTTCATAACATGCAGGAAGAAGTTAACTTACTCAACAAGGATTGCTGACTCCAAGGATTTTAAAAGGTTGCATGCAATAAAGGTTCCAGAAGGGGGTTTTGGACTTTCCAAATATTGTACACCTATACTGAGACCATGAGCAGTGTGAACTCTGCTGCTTGTCTGCTGGCAAAGAATCACTTTTACCAGAATATCAGTCCTACCAACAAAATACAGCCTGTGTACAGTTTCCCTGGAAGTCTGTCACAAGCAAGACAAAGGCAAGTGACTGTCTGGAAAACTGCCTCCTTGCATCAAGGTTTGCCAGGACAGGAGCCCAGACCATGGGTATTAAGTTTGGTTTGGAAACGTCCATTATCCAACCCGGCCTCATCCAAAAGGCTAGGTTCTGCTGACCGTGTGATCAAATAGACATCTGAACTACACCTTGTCAAAAGACACGTAACATTCCCTGAGCCACAGCATATTCTTTCCCTTTTGAAACTCCTAACCCACTAGAGATTGGGTTTAAAGACTTGATCCAGCTGATCTAGACCCCATGAATAGTTTCCTAGCAGTTCTACctgtaaatattaaactatTTCATTTGTCCAGGAAGATTCAAGAAAGAAAGGACCTGCAGTTGTTTTGTGGCATGATGCATTCCCCTAATTGCTTCTCATTTTTCCCCAAAGAGCGAAAGAGCATCTCTTGTGTTCTCCTTAACCCTTACTGTAGGGAGTGTGTGTCCTCATTCCACAGCGCCCAATCAGAGCTTTACCTGGTCTCCCCAGCACAGACTTGTTGCCAAGCACAGGGGAAGAGAGACTGAATGAAAAGGATAGTGTCAGCGCACTAGACAAAGCCTTTTCCATGAACACAACCATCAGGGCTCAGTGACCCGAAAATATGCAAACACATGAGGGGAAAAAGCATGCACTTTATGAGAGCCGTGTTCAAAAtctttaaatggataaatggtGAGGTCAGGTTCTATTTTCTCAAGCACATTAGATCAGCACATTCTGTCATGCAAATCTTTTATAAAAGCAGAGtcttctttttgtatttttctgctcaaatgtgaaatgaaaagcTCAGTCCTTTTCCCATCTTAATTATATCACACAGTCTGGATCAGCATTAGTGGGCTTCCCTCTCACTCAAATGAATGTCTCTAGACTTGTTTACTTTTCCAAAAGCTTCATGCTGTTTTTCCAAAGTGTGCAATGTGATTCAAAAGGAAGTTTGCACAACGGAATGTACACAGAAGACCCACTCAACCTGAATTAACATGCCAGTTACACAACAGCTCCAGATCAGCTCTAAAAGCATGGCAGGAATAAGGGATGGCTGTATCCTTTTTCCTTAGATACTCTGAATAAACACATTGATAGAGGTCATTACTCTGGAATAAGATGTGAAAAGCTGTGTTAACAAGCCAAAAATAGGCTTACACTGAAGGAATAAACCAGCAATGAAAATGACGCAAAGTATTCCTACATTATTGCACATGTACAGTGGAAAGCAGTATTTGAGGAACTTGCTGAGTGTAAGTAACCATTAAAAGGATTTGCTTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300415 False 1498 lncRNA 0.42 4 12143714 12150861
XR_003403159.2 True 1663 lncRNA 0.42 4 12143633 12150945

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_33 NA coding downstream 2460 12141102 ~ 12141173 (-)
gid8b gid8b,gid8,LOC108276161,LOC107560896,LOC108231957,LOC107391203,LOC105906441 coding downstream 55912 12083985 ~ 12087721 (-)
slc17a9b slc17a9,slc17a9b,LOC107563661,LOC107560897,LOC106566596 coding downstream 60100 12068589 ~ 12083533 (-)
rnd1a rnd1a,LOC108275558,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding downstream 211138 11926906 ~ 11932495 (-)
prim1 prim1,LOC107741309 coding downstream 227649 11907926 ~ 11915984 (-)
zgc:194282 srms,LOC108276248,LOC108435233,LOC107657057,LOC107747981,LOC107672012,LOC107560891 coding upstream 17582 12168527 ~ 12185778 (-)
nol4lb nol4l,nol4lb,LOC107563666,LOC107672011 coding upstream 36849 12187794 ~ 12285570 (-)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919 coding upstream 155208 12306153 ~ 12316352 (-)
ube2t ube2t coding upstream 244499 12395444 ~ 12400748 (-)
zgc:194242 LOC108276244 coding upstream 250520 12401465 ~ 12406721 (-)
G253538 NA non-coding downstream 238947 11904277 ~ 11904686 (-)
G253509 NA non-coding downstream 365700 11777718 ~ 11777933 (-)
G253492 NA non-coding downstream 385703 11755205 ~ 11757930 (-)
G253499 NA non-coding downstream 399475 11743950 ~ 11744158 (-)
G253494 NA non-coding downstream 428880 11712997 ~ 11714753 (-)
G253749 NA non-coding upstream 66479 12217424 ~ 12217744 (-)
G253843 NA non-coding upstream 241418 12392363 ~ 12393653 (-)
LOC113530910 NA non-coding upstream 455596 12606541 ~ 12607682 (-)
G253977 NA non-coding upstream 510299 12661244 ~ 12709317 (-)
LOC117599211 NA non-coding upstream 541400 12692345 ~ 12714080 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 284287 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 575030 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 680927 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 1118624 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 1127967 11009463 ~ 11015666 (-)
ptk6b LOC108276246 other upstream 4783 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 746529 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1100195 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 1978018 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2548327 14699272 ~ 14704270 (-)

Expression


Co-expression Network