LOC117599211


Basic Information

Item Value
gene id LOC117599211
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12692345 ~ 12714080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU300707
CTTAACTCTCGACACCCGCCCCGTGTGTACCATTAACACATTGCTCtagattatgtttttttgtttgttttttttaatctaagatCATCACGGTCATGTCTGGCTGCTTTGTATCTAATGCTAAtcgattttttttcctgagatcCGCTGCGGTGACGAATTTTGATGGCATTATTAACCAGGCTGACCCACTTCTTTTTGGCTTTTGGGATGGACAGGAGTGTGCGACAGTATGGAATATAACTTAGAGACCAGTTTGACGAGATCCCAGggaataaagacagaaaaaccaTCACTAAGCTTCATCTTTCCGGTGCTGttactgcattttctttttctctctcctaaTGTCAGCACACTGTCCATACTGTCTCCTACTCCTGTTTCAGATCCCACAGGATGTAGCTCAGAGAATCTGGCTTTCGTAGGACAGGTGGGAGGATGGGGGTGGGGTTTCCTCTAAAAGTACCATGATGCATTGCCAATCAGACATGCCCATACTGTGATGAGATGGGCTGGAGGCCTATGATTGCCAAAGTTATTTTTAACCTACCTTGCTCTGTTCCTCCAGCCTTtctattttgtttcatttcaactTTTTTTCCCTGTGCATCATATGAAGAAGCAAGACACCTCCAATGTCACTGCCTCCTTTTCTCCTTTCcatctcttttattttcacctccttttctcttttccaccctctctctctctctctctctctctctctctctctctctctgtctctccccttctctctgcTCTCATCCTTAAACTCTCAAACGCTGATTCAGCTGCTGGTATACAGACGATCCTGCTGCCATCCCCATCCAGTACAGCTTCTCTCGATTTGGGCTGCAGCCGTGAGCTCCAGCACTACTGTCCCACTCATCCCAGAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCTATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCACCCCAGAGGGCagtgagatagacagagaaGATCTGggagcacacaaacacatactaaCACTCTACAGGATTCACCTTATGACCATGTCTGACAGGATCTGAACATCCAAGGAGCTGTCATATGGATTCGTTGATCCAGCTAGAACACCAACCTGATACACTTCACCCCACACATTATAATCTCTAATAACATGATTAAACACTGTGAGGTTATTAAAACCCAGGTGAACATTAACCATTCCATGCTGTTCAACTCTTTATGACTGATAATATCGGATTATGAATCCAGCCCCATTCGCTGTCACTGGAATATAGGCTTGCTGAGCTTTATGGCTGCCCATTGATTTCTTGTCTTGctggtgaaagagagagatgtggagGGACAGGATGGGAGAGAGGGCTGCACGTCAAGCTGTTGAATAAGTAAAGCAATCGttccttttctcctctttttcccCCACACACTTGTCGTGATCCTTAATGCACGTTTCTGATCAATAAAAGCTCATCCTGAGGTCCATAAATGCTGaagtgggtgtttttttttaaatgctggcTTCTTGATGGAAGGAGGAAGGTCAAAGTGAAGGGAAATGGataggaagaaaaggaaaataagggaagatggatggatgtatggagGACAGGAGTTGGCAGATTGACATGACAGTGCAGAAGAACTGTGAATAAAGGAATGGgtaacatgatgctaccacacAATATCCTAGATTCTAGCATAGGCTTGTTACGGGAATTGAATATTCAGATTAATATTCTAAGGACTAATTAAGGCAACACTAACCAAATATCAGGCAAAATAATCCTGTTCATTACTGAAACCTTAACCATTTGTAACATTTAGTCATGATATCATGTTAGTTAAACACCAAGGTCTCCTTCACACAGCATATTTTGCTGGTATAACAGCAGCACATAGCAGATTTGGTTGGGCAggaactttctttctttctttctttctttctttattacttactgacttacttatttacttatttgttgcTTGTTTGTATTTATCAAGTTGTGCCCAGAAATGAATATGACAATGTAGACCATATTGGGCAGCAGTGAACAGGAGGTGTGACAGCTGAAATCTGCTGGTGCAGTGGGACTTTTAAACCTACTTTGACCCAAAACTGCTGGAATTTCTGACTTCATTGCTCACAAGCCAGTTTTGTGGATGTACTCTGCTTCTGTCAATAGCCTTCTTTAACCAACTATTAAATACTATCGtctgtattattttaaagtgacaaataaaaacaaacaaccaagTTGTGGCTACTAAATGTGAATTAGACAGTTGTCACCTTATTGCACATGGAA
>XR_004579658.1
CTCTCGACACCCGCCCCGTGTGTACCATTAACACATTGCTCtagattatgtttttttgtttgttttttttaatctaagatCATCACGGTCATGTCTGGCTGCTTTGTATCTAATGCTAAtcgattttttttcctgagatcCGCTGCGGTGACGAATTTTGATGGCATTATTAACCAGGCTGACCCACTTCTTTTTGGCTTTTGGGATGGACAGGAGTGTGCGACAGTATGGAATATAACTTAGAGACCAGTTTGACGAGATCCCAGggaataaagacagaaaaaccaTCACTAAGCTTCATCTTTCCGGTGCTGttactgcattttctttttctctctcctaaTGTCAGCACACTGTCCATACTGTCTCCTACTCCTGTTTCAGATCCCACAGGATGTAGCTCAGAGAATCTGGCTTTCGTAGGACAGGTGGGAGGATGGGGGTGGGGTTTCCTCTAAAAGTACCATGATGCATTGCCAATCAGACATGCCCATACTGTGATGAGATGGGCTGGAGGCCTATGATTGCCAAAGTTATTTTTAACCTACCTTGCTCTGTTCCTCCAGCCTTtctattttgtttcatttcaactTTTTTTCCCTGTGCATCATATGAAGAAGCAAGACACCTCCAATGTCACTGCCTCCTTTTCTCCTTTCcatctcttttattttcacctccttttctcttttccaccctctctctctctctctctctctctctctctctctctctctgtctctccccttctctctgcTCTCATCCTTAAACTCTCAAACGCTGATTCAGCTGCTGGTATACAGACGATCCTGCTGCCATCCCCATCCAGTACAGCTTCTCTCGATTTGGGCTGCAGCCGTGAGCTCCAGCACTACTGTCCCACTCATCCCAGAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCTATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCACCCCAGAGGGCagtgagatagacagagaaGATCTGggagcacacaaacacatactaaCACTCTACAGGATTCACCTTATGACCATGTCTGACAGGATCTGAACATCCAAGGAGCTGTCATATGGATTCGTTGATCCAGCTAGAACACCAACCTGATACACTTCACCCCACACATTATAATCTCTAATAACATGATTAAACACTGTGAGGTTATTAAAACCCAGGTGAACATTAACCATTCCATGCTGTTCAACTCTTTATGACTGATAATATCGGATTATGAATCCAGCCCCATTCGCTGTCACTGGAATATAGGCTTGCTGAGCTTTATGGCTGCCCATTGATTTCTTGTCTTGctggtgaaagagagagatgtggagGGACAGGATGGGAGAGAGGGCTGCACGTCAAGCTGTTGAATAAGTAAAGCAATCGttccttttctcctctttttcccCCACACACTTGTCGTGATCCTTAATGCACGTTTCTGATCAATAAAAGCTCATCCTGAGGTCCATAAATGCTGaagtgggtgtttttttttaaatgctggcTTCTTGATGGAAGGAGGAAGGTCAAAGTGAAGGGAAATGGataggaagaaaaggaaaataagggaagatggatggatgtatggagGACAGGAGTTGGCAGATTGACATGACAGTGCAGAAGAACTGTGAATAAAGGAATGGgtaacatgatgctaccacacAATATCCTAGATTCTAGCATAGGCTTGTTACGGGAATTGAATATTCAGATTAATATTCTAAGGACTAATTAAGGCAACACTAACCAAATATCAGGCAAAATAATCCTGTTCATTACTGAAACCTTAACCATTTGTAACATTTAGTCATGATATCATGTTAGTTAAACACCAAGGTCTCCTTCACACAGCATATTTTGCTGGTATAACAGCAGCACATAGCAGATTTGGTTGGGCAggaactttctttctttctttctttctttctttattacttactgacttacttatttacttatttgttgcTTGTTTGTATTTATCAAGTTGTGCCCAGAAATGAATATGACAATGTAGACCATATTGGGCAGCAGTGAACAGGAGGTGTGACAGCTGAAATCTGCTGGTGCAGTGGGACTTTTAAACCTACTTTGACCCAAAACTGCTGGAATTTCTGACTTCATTGCTCACAAGCCAGTTTTGTGGATGTACTCTGCTTCTGTCAATAGCCTTCTTTAACCAACTATTAAATACTATCGtctgtattattttaaagtgacaaataaaaacaaacaaccaagTTGTGGCTACTAAATGTGAATTAGACAGTTGTCACCTTATTGCACATGGAACATCATATAATGaatagatttaataaaattacataacTAAGAGATGAGAAGTTAGCCAATATAAATGCTTTGAGCTAGAGCTTTGTCAAAAGGCAGCTCTGGCTCGGAGGCAGGAGGAAATTAATTGGTTCAAACAGCCAACTGCTGGAGCTTACTTTTCGAAGGTTTGCATTAATTCCCTAGCCAGTAACAGTACTGCTGTTTGTTAGCTTGGCTTTTGACTTTTGATTTTGACTAAAAAAGGGGTTCTTATTTATATGATGttggcaacaaaaaaaaaaatgtccattttcTGTTAGTGGTGTTAAATTAGTTcgtttttgttaaattaaaaaactgtTCAGAAAGCTACCTACACTCTATAATAAGGTACATAAGCCATAAACTTGTCtgatcactaacattagcttaTTAATTAGCTGGCAACAATGTCATCAACAACTTTTGGATATCTAGCTGGCTTGtaacttaaatatttaaataaagtgtgcCATTCTACGAGTCACCATGCTGAGCAGCTCTCACTGTGTATCTCAGCATCCTTTACACCTcttgataaaatattaaaacaaacccCAACCTTTTGTAAAATTACACCACTCTGGGTCACAATACCACCTGTgctgacagacagaaaaatatataatgtactgtatgtgccaTAACTTCATGTCCTAATGCCATGATCTTTTGTCGGGTTTTGCCATTTGTATTATGATCACAGGAATGTGTAAGTTGCCGTGTTACACCAGCTCCACCTCATCATTCCCCTCCTTCAGGTCGACCTAACCTCTTCTGTCAGCCTTGTTATGTGGTGTGGTAATGGTCACAGacgtttgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagggggaAACAGAGCAGAACCATTTCCCCTGTGTAAAAGATTTAATTCTGTTATTTGTCTTTTACTGGCTGGTAAAAGATCCTATTACAAAATTACTGGGGtgaatctttctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacgggcaaaGCACATGGACAAATTACTGTTCACAAAACATCGAAACCAGGGATATGTAACGAGGTTTTAAGCGAGGTTTCACCAGAATAATTGAGAATCAAATATtaactgtactgtatgtaaagtaCATGTACTACATGTAAAGTACTGTACTGCATGACATGGTAAAGTTCTTCTAAATCAACTTGATCTCATGAATAAATTGTgcaaattcaaacaaattca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300707 False 2329 lncRNA 0.42 2 12693619 12714080
XR_004579658.1 True 3598 lncRNA 0.40 2 12692345 12714075

Neighbor

gene id symbol gene type direction distance location
slco4a1 slco4a1 coding downstream 37524 12615024 ~ 12654821 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding downstream 119837 12545673 ~ 12572508 (-)
snphb snph coding downstream 186382 12485170 ~ 12505963 (-)
LOC113530362 NA coding downstream 261850 12422647 ~ 12430495 (-)
LOC113530803 LOC108276244 coding downstream 276379 12412074 ~ 12415966 (-)
LOC113530792 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232 coding upstream 261364 12975444 ~ 12987137 (-)
myt1b myt1 coding upstream 281340 12995420 ~ 13028887 (-)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683 coding upstream 726704 13440784 ~ 13451374 (-)
sla2 sla2 coding upstream 911818 13625898 ~ 13632021 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding upstream 921732 13635812 ~ 13699042 (-)
LOC113530910 NA non-coding downstream 84663 12606541 ~ 12607682 (-)
G253843 NA non-coding downstream 298692 12392363 ~ 12393653 (-)
G253749 NA non-coding downstream 474601 12217424 ~ 12217744 (-)
LOC113530483 NA non-coding downstream 541400 12143633 ~ 12150945 (-)
G253538 NA non-coding downstream 787659 11904277 ~ 11904686 (-)
G254052 NA non-coding upstream 94300 12808380 ~ 12808599 (-)
G254101 NA non-coding upstream 209639 12923719 ~ 12924012 (-)
G254109 NA non-coding upstream 218139 12932219 ~ 12932420 (-)
G254110 NA non-coding upstream 218645 12932725 ~ 12933139 (-)
G254107 NA non-coding upstream 254284 12968364 ~ 12970011 (-)
ptk6b LOC108276246 other downstream 524550 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 832999 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 1123742 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 1229639 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 1667336 11020531 ~ 11025009 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 183394 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 537060 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 1414883 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 1985192 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 2544405 15258485 ~ 15317365 (-)

Expression


Co-expression Network