oprl1 (oprl1,LOC107681404,LOC107727003,LOC107666560)


Basic Information

Item Value
gene id oprl1
gene name oprl1,LOC107681404,LOC107727003,LOC107666560
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13251140 ~ 13283885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU300928
TGAAATGCAAGACACCTATATGTAGTTCATACCTCTGGGCTTGCCAGACTTTTCTTGAATAGAGGTGTCTGAAATGGAAATTTAAATAGCGACAACcgcatttaaacacaagtgcTTGCCTTTAACCCTGAAAAATTCCAGGAATTGAAAACGCTGTCTCGCATCTGTTGATTGTACTTTCCACAGCAAAATTAAAATTGTCTCAGTGTGCATT
>XM_026920113.2
GATtcgcaagaagaagaagaagcagaaaccCATTACTGCACCTCCCCTTCCCCTTTCGcgcgagagagggagaaaaaaaaccccacaccgCAGCTCTCATCCTTCAGCCGTATGCAGTACTCTCGGAATTGCTTTCCGCTAAATTGCTAAATTGAAAACAAGCTGCTGAAAACCGCATGAGGTCGAGTGAATGATATGAGCTACATTAACCATCCCTTCTTGGATTCAGAGGCATCCATATGAACCTGCGTATTTGTAGTCGTCTGAAGGAGATCCTACGGATTTAAACATTTCTTCCTGCTTTACGGCGTCCCCAAATGGAGTTCATAAACGAGTCGTTGGGCTTTGGGGATCCGAGGCATATTCGGCTTTACAACGAGTCGCTGTTCCAAAACAACTTCAGCGAGTTCAGCGACGCGGACGACCTGTTCCCGCGCAGCGTGAGGATCACCATCGCACTGGTCTACATGATCGTGTGCATGGTGGGACTCGTAGGAAACTGCTTGGTGATGTATGTCATTATCAGGTACACCAAGATGAAGACAGCCACCAATATCTACATTTTTAACCTGGCTTTGGCTGATGCATTGGTCTTGGCCACACTTCCTTTCCAGGGCACAGATGTGTTCCTAGGTTTCTGGCCCTTTGGCAATACCTTGTGCAAGGCAGTAGTTTCCATCGACTACTACAACATGTTCACTAGTGTCTTCACCCTTACTGTGATGAGCATGGACCGCTATGTGGCTGTGTGTCATCCTGTCAAAGCTCTGGATATGAGGACACCCCACAAAGCCAAGGTGGTCAACATATGTGTGTGGCTACTGGCCTCTGCCATTGGCGTGCCAGCCATGGTGCTTGGAGATGTTGAGGATGACCATGGCATTGAGTGCATCTTGGTCCTGCCAGACCCCCGCAGCTATTGGGACCCAGTGTTCGGCACATGTGTGTTCCTGCTCTCCTTCCTAATCCCGGTAGccattattagtgtgtgttatagccTGATGGTCAAGCGCCTGCGCAATGTACGTATTTTGTCCGGTTCCAAGGAGAAGGATCGCAACCTGCGGCGTATCACGCGCatggtgctggtggtggtggcagcatttGTCGTGTGTTGGACACCCATCCAGATTATGGCACTTGCACAGTCACTGGGTGTGAATCTGGGCAGTGTGCACACTGTGGTGCTCATGCACTTCTGCATTGCACTTGGCTACGTGAACAGCAGCCTAAACCCAGTACTCTATGCTTTTCTGGATGAGAACTTTAAGCGCTGCTTCCGTGAGTTCTGCCAGCCACCATCTCCTTTCAGCCTGGATGCGCAGCAGCAGTCGGGCCGCATGCACAGCGTGGCGCGAGATGTTGCCTACAACTGCAAAACTACAGAGGCAAACAGTAATGCTGCATGACTAGGCGTGGAGCTGCCCCTGGTCAGCCCGGAACAGCCACCAAATCCAGGGACAGGACACTCTAACTCAGAGCTCACTCAGATCACTGTTCTCTAGCACTGTCTAGGGGTGGAGGAATGAGAAGGACAAGGACTGAGGGTGGGGTCAAAATCAGTGACACACCTAATCTTAGGGACAAAGGGGCTCACTTTTTAGTCTTGTGCAGATTAAGTATTAATGTCTTCATCTTTtgcttgatttgttttttttaaatcatcatttCTTTGTTATTTGGTGGTGACACTAAAGAGATGCTTTTGTGTATTGGTGGCATTTGGTATTTATTTCAATGGGACTACATTGCCTTAAATAGATTATAAACTCTGTCAAAGTTGAAGCTTGAGTGACCTGGATTGAGCTTAACTcacattcttttaaaattaCCTTCCAGTTGACCACATTCcatttaaaacatacaaaacagaGACTTAACTGTTAAAgccagatgtttatttaaaaatgctatttttcctgtttgtcctgtaacaaaaagaaaaaaaaatgtaatattgcaTTGTTTCATGGCAGGTTTATTCTCTAGCATAATTTGTACAGAAGGTAAAAATGTAGTGCATTTAGTGTTATATTAATCGGTGCATACAATGAAGTTAATTAGCATGAGTCTTAGTATTCTTACAGTCATCTGTCAACCATACCTCTGATATTCTTGAATGTTTTGAGTGTACCCAGCATCTTGGTTCACTACCTCGTGTTATGGTGAGTCTGAAACAAGGAGTAAGCTTTCTCATCAGTTTACATCACTGACCGCTGAATGtcaaatgactttttaaagaagccaaaaaaaagttataaatagGTAGAAAGGTTCTCTAGTAGTCTGGAAAAGACACTGTAAACTTAAAAGCTTCTTCATGTATgctgtatttaatgttgtaatgatTTGTTCACTTGCTGAAATGTATtggtttacttatttatttatggaattatttattactgaagaGAATTGTTGGACAAACAGATGCTGAAGCTGCCATGTCAGTTGTCACAATGGAGTCTAAACAATTACTGTATTCTGAGGTTAATATTGGAAATTATCTATATATTTTCTCTGTGTGcattaaatgacattaaatgatACTGCAAAGATCTGTTCCACCTTTGTTCATAcagctggttttctttttttctctctgagcaGCAAGTAATAAAAAACGAGGAAGAGGAAATGCAGAAGTGGGGGTATGTTTAAATTGGAAAAGGCTTTGTGTGGGCCGCATATAAACAAAACTgactttttaaatgtctttatcaCACAGGGAATCATATGAATCAGTTCATCAGTCCACATCTTTCATGCTAATATACATGGCAATGTTAGAATTCTTTTTTCTGCAGAAACATGCATAATTTGCCAGTACAAGGAGTTGTGCAACATGGAGTGTGACAGTTGAAATCCATCAATGCAGTGGTATTTTCCCATCTATTCTAGTCCAAAAATATGTGATACCACCCACCATGACTCGATCTTGGTACAAACACAATACTAAAATGGTATTTTCCTTCAAATCCCTTTGTCCCTTTTCTTGCGACCAAGTTTTGTTGCTGTACACTATTTATGACACCCTACTTCACTCAACTACCTGAATATGACAGATGGCCTTTTTCAAAGGTgtcttaagtccaaaagttgtCAATATTTATATGGGGAAAGTTACTTGTATTCAGAATCTGGTTATTGACATAAATTAATTTTCTGTGGGCCCCAATTGAAATGCAAGACACCTATAT
>XM_034311548.1
tgttgtattttgtttttgttgtttattttgctgATTAGGTTTCTCTGGGCACAGCTTGGCTCATTATTATAACCCCAGTAGCTCATTCAGATCTCATATCCTCTTTCATCAGCTTCCCCCTCTTGTTCCCTCTATAGCAGCAGCTAATGACCTGAGACCAGCCCACACATTCAGAGCATGTCTGTAGATACCCAAGAAGCATGGTACACCAAGATGAAGACAGCCACCAATATCTACATTTTTAACCTGGCTTTGGCTGATGCATTGGTCTTGGCCACACTTCCTTTCCAGGGCACAGATGTGTTCCTAGGTTTCTGGCCCTTTGGCAATACCTTGTGCAAGGCAGTAGTTTCCATCGACTACTACAACATGTTCACTAGTGTCTTCACCCTTACTGTGATGAGCATGGACCGCTATGTGGCTGTGTGTCATCCTGTCAAAGCTCTGGATATGAGGACACCCCACAAAGCCAAGGTGGTCAACATATGTGTGTGGCTACTGGCCTCTGCCATTGGCGTGCCAGCCATGGTGCTTGGAGATGTTGAGGATGACCATGGCATTGAGTGCATCTTGGTCCTGCCAGACCCCCGCAGCTATTGGGACCCAGTGTTCGGCACATGTGTGTTCCTGCTCTCCTTCCTAATCCCGGTAGccattattagtgtgtgttatagccTGATGGTCAAGCGCCTGCGCAATGTACGTATTTTGTCCGGTTCCAAGGAGAAGGATCGCAACCTGCGGCGTATCACGCGCatggtgctggtggtggtggcagcatttGTCGTGTGTTGGACACCCATCCAGATTATGGCACTTGCACAGTCACTGGGTGTGAATCTGGGCAGTGTGCACACTGTGGTGCTCATGCACTTCTGCATTGCACTTGGCTACGTGAACAGCAGCCTAAACCCAGTACTCTATGCTTTTCTGGATGAGAACTTTAAGCGCTGCTTCCGTGAGTTCTGCCAGCCACCATCTCCTTTCAGCCTGGATGCGCAGCAGCAGTCGGGCCGCATGCACAGCGTGGCGCGAGATGTTGCCTACAACTGCAAAACTACAGAGGCAAACAGTAATGCTGCATGACTAGGCGTGGAGCTGCCCCTGGTCAGCCCGGAACAGCCACCAAATCCAGGGACAGGACACTCTAACTCAGAGCTCACTCAGATCACTGTTCTCTAGCACTGTCTAGGGGTGGAGGAATGAGAAGGACAAGGACTGAGGGTGGGGTCAAAATCAGTGACACACCTAATCTTAGGGACAAAGGGGCTCACTTTTTAGTCTTGTGCAGATTAAGTATTAATGTCTTCATCTTTtgcttgatttgttttttttaaatcatcatttCTTTGTTATTTGGTGGTGACACTAAAGAGATGCTTTTGTGTATTGGTGGCATTTGGTATTTATTTCAATGGGACTACATTGCCTTAAATAGATTATAAACTCTGTCAAAGTTGAAGCTTGAGTGACCTGGATTGAGCTTAACTcacattcttttaaaattaCCTTCCAGTTGACCACATTCcatttaaaacatacaaaacagaGACTTAACTGTTAAAgccagatgtttatttaaaaatgctatttttcctgtttgtcctgtaacaaaaagaaaaaaaaatgtaatattgcaTTGTTTCATGGCAGGTTTATTCTCTAGCATAATTTGTACAGAAGGTAAAAATGTAGTGCATTTAGTGTTATATTAATCGGTGCATACAATGAAGTTAATTAGCATGAGTCTTAGTATTCTTACAGTCATCTGTCAACCATACCTCTGATATTCTTGAATGTTTTGAGTGTACCCAGCATCTTGGTTCACTACCTCGTGTTATGGTGAGTCTGAAACAAGGAGTAAGCTTTCTCATCAGTTTACATCACTGACCGCTGAATGtcaaatgactttttaaagaagccaaaaaaaagttataaatagGTAGAAAGGTTCTCTAGTAGTCTGGAAAAGACACTGTAAACTTAAAAGCTTCTTCATGTATgctgtatttaatgttgtaatgatTTGTTCACTTGCTGAAATGTATtggtttacttatttatttatggaattatttattactgaagaGAATTGTTGGACAAACAGATGCTGAAGCTGCCATGTCAGTTGTCACAATGGAGTCTAAACAATTACTGTATTCTGAGGTTAATATTGGAAATTATCTATATATTTTCTCTGTGTGcattaaatgacattaaatgatACTGCAAAGATCTGTTCCACCTTTGTTCATAcagctggttttctttttttctctctgagcaGCAAGTAATAAAAAACGAGGAAGAGGAAATGCAGAAGTGGGGGTATGTTTAAATTGGAAAAGGCTTTGTGTGGGCCGCATATAAACAAAACTgactttttaaatgtctttatcaCACAGGGAATCATATGAATCAGTTCATCAGTCCACATCTTTCATGCTAATATACATGGCAATGTTAGAATTCTTTTTTCTGCAGAAACATGCATAATTTGCCAGTACAAGGAGTTGTGCAACATGGAGTGTGACAGTTGAAATCCATCAATGCAGTGGTATTTTCCCATCTATTCTAGTCCAAAAATATGTGATACCACCCACCATGACTCGATCTTGGTACAAACACAATACTAAAATGGTATTTTCCTTCAAATCCCTTTGTCCCTTTTCTTGCGACCAAGTTTTGTTGCTGTACACTATTTATGACACCCTACTTCACTCAACTACCTGAATATGACAGATGGCCTTTTTCAAAGGTgtcttaagtccaaaagttgtCAATATTTATATGGGGAAAGTTACTTGTATTCAGAATCTGGTTATTGACATAAATTAATTTTCTGTGGGCCCCAATTGAAATGCAAGACACCTATATG

Function

symbol description
oprl1 Enables neuropeptide binding activity and nociceptin receptor activity. Predicted to be involved in neuropeptide signaling pathway and sensory perception of pain. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Is integral component of plasma membrane. Is expressed in brain; digestive system; gill; heart; and muscle. Orthologous to human OPRL1 (opioid related nociceptin receptor 1).

NR:

description
nociceptin receptor-like

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0045203 integral component of cell outer membrane cellular_component
GO:0001626 nociceptin receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
K04216 OPRL1; nociceptin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU300928 False 214 lncRNA 0.38 1 13251140 13251353
XM_026920113.2 True 3200 mRNA 0.43 4 13251333 13283885
XM_034311548.1 False 2878 mRNA 0.41 3 13251332 13257726

Neighbor

gene id symbol gene type direction distance location
myt1b myt1 coding downstream 222253 12995420 ~ 13028887 (-)
LOC113530792 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232 coding downstream 264003 12975444 ~ 12987137 (-)
slco4a1 slco4a1 coding downstream 596319 12615024 ~ 12654821 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding downstream 678632 12545673 ~ 12572508 (-)
snphb snph coding downstream 745177 12485170 ~ 12505963 (-)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683 coding upstream 156899 13440784 ~ 13451374 (-)
sla2 sla2 coding upstream 342013 13625898 ~ 13632021 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding upstream 351927 13635812 ~ 13699042 (-)
phf20b phf20,LOC107594424 coding upstream 416551 13700436 ~ 13721730 (-)
si:ch211-218g4.2 LOC108275877,LOC108429303,LOC107724193,LOC107696985 coding upstream 449203 13733088 ~ 13813355 (-)
LOC113530405 NA non-coding downstream 48509 13201019 ~ 13202631 (-)
G254153 NA non-coding downstream 109921 13141011 ~ 13141219 (-)
G254107 NA non-coding downstream 281129 12968364 ~ 12970011 (-)
G254110 NA non-coding downstream 318001 12932725 ~ 12933139 (-)
G254109 NA non-coding downstream 318720 12932219 ~ 12932420 (-)
G254270 NA non-coding upstream 144405 13428290 ~ 13488493 (-)
LOC117599295 NA non-coding upstream 180306 13464191 ~ 13465215 (-)
G254568 cables2 non-coding upstream 306615 13590500 ~ 13590970 (-)
G254587 NA non-coding upstream 330543 13614428 ~ 13614663 (-)
G254599 NA non-coding upstream 381008 13664893 ~ 13665473 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 316832 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1083345 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 1391794 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 1682537 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 1788434 11456020 ~ 11462706 (-)
LOC113530423 LOC108276099 other upstream 845078 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 1415387 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1974600 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 2374451 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 3363938 16647823 ~ 16695031 (-)

Expression


Co-expression Network