G254600


Basic Information

Item Value
gene id G254600
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13692797 ~ 13696620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU301398
aaaaaacccacgcTTCCTAAGCACGCTGTTTTTCATGAGCTAATACAATAGTGTACTAGCGTAGTACAGCTGTGGTTATGGTCAACATCAAGCAGGAGCTGGAAGATTCCCCATAATCCTTAAGGTCTGGTGTATATGAGCACCTCAGCTACACGTCCACACATCTGCATCGCTTAGCAGAACTCGACGAAACCAtgaagcaacacacacacacatttcttttgcCTCACCGATTCAATCCAGGTTAAAGAGACTGGAGTCTGATGGAGAACGCAGGAGTCAGAACTATGTCTAAGGCTCCAGAAAGCACTGATTTTTTCCGACAGCAAACCTAGCAAACAGCAACAgcagaatgtgaaataaaagccCCGTGCTTCAGACACATCCCCAGAGAAAGCTTGGCCAGAGAGCTAATGTTTCATTCACCATGATTCAATGATTTTCCTTTTATAACATCAGATGTTTTAATgaactgaagatgaaaagctaaggcacatattcaggCAATGCGTATTTTTCCTGTATCGAAAAcatatcgtttttttttttttttttttctaaaatcttATTGTGTCATTTTGTTACATTCCTTGAAGcttcatttctgtgctttcttgTTGTCAGTGAGTAAATAGCCTGGAccatcagattattataaacatgcatttccACTGTATACAgtcaaataaagtttattaaccCAAAGATATAAGCTTAGTGCACGCAAGCCAAGACAGATTGAGCCCAGCGCCTGGGGAATTAAGATTTATTATTTGGTCTGTTGAGAATTCAAACTGTGAATATGAACAAAATCTCTCCAGCAGGAATGTATTATAAGGTGAAAGGAATTTAACCAAGGCAGAAGCGGCGAATGGAAAAGAGGAATCGCGCTTTAAATCAGCGTCTACTCTTTGAGCTCGAGTTTAACGCTTCATGAATGGTTTGCAAGCTACTGCTCTATTAATGTGGCTTTTAATCGTTGGGACCAGTCGCGCTCTTAGTGCAGGTTATAGTGATAAATGGAAGAAGCATACGGTGTTTGCGAGCACGGAGACACACGCCATCCTGTGCTGCTAACACTGCCGCTAACCCACTTTCCTTAAATACTAGCTGGAAAACTATAAAGCAGCAGCAGTGCTGTATGATCCGCGACAGCGGCTTGCATATGGCTCATCTACAGCAGGACACACTCCGCTGTCATGTAGTCAGATGTGACGCCTGGGCTGAGGGGATAGAATTATCAAAATAACGAATGGTCGTAGCTTCATGTCCTTTGCTCACGCAGCCCTGTCTATTCGTATGATGCTCTGTGTTTTTTCATTTGCGTTAAGCATGTTTTGCCCTTCATTTCTCTTCAGAACGTCTCTTAGCTGTAGTGTAATTGAACAAGGGAAATAAAGATAATGACAGTCTTTAGCTGTTAATCTTTGAGAGGTCGGAGCAGTCATACCTTCTTTCTCTGTGCTCTCTAACGTTTAGCTGTTTCCTCTTGTCTTGCACCCACCACTTCAATTTGACTTAATTCAATTGTGTCGCAAAGTAGATTacatagacattgtcacaaagcagctttagagaaatccggatgtagctCTAATTtgcaagtggaaaaaaaaactctccctGACACGACAtaaagaagaaaccttgagaggaaccagactcagaaggaaaCCGAGTCTCTTCTgcgtgacaccggatagtgggattgTGATCATTAGAGTATACGCTGAACACGAGTGGTTCACGGCAAGAGATATTCTGgtaggtgagattatccactgcaGCAGGAAGGTTAAGCCTAAGCTGCATCCTCCGAAAGTTTTGCAAAGTTGAGATGAATTTCACACAAGGCCAGCTCACTAAGTCAGCTCCACTACTTCATCTTCTCTTTAGCACTAAGCCTGGTTTTCAGCTAAAGTGTTCTCAATGAGTTTCAGGCTGGATCATGATCCATGGTCTTATCACGATTATTTTTCAAGTTGGTAATTAAGGCTATTTTGCTGTTTAAGTTACTGAAGAGAGCAACCAAAATAGTTTCCTTAGTAGTGAAAATAAAGCTCTACAAGCAAACATAACCTCAGAGGAAAAGAATAACAGACACAACTTGAGCCAAAGTGCACTTCttacaaaaatgtaaacaattatttctaaaataaaagcaattaaGCATGGATagctgattaaaaatgttaaataaaacaatacatcaCCTTTACATTCATCTCTTTACATTCACCTTTATATCAGCTTTCTATGCAATAAATGTAAAGATGATTGACAGGCGTGTGAGTATGTGAATATGTTTAAATACTCGAATACATTAGCTGAGGTGGTTGGTGCGTGTCATTGTTTTGGTTTTCATTGCTCTTCTCGCTGCATTCTCTGTACttttgaactgaaaaaaaaaagtagtaacGAGGATCAACTATTTGCTTAAAGCCCTAGTTTTTGACCGGTTCAGTGGGTATTATCTGCTTGACCAGGTAAAATTCACAACATCAGTGATGTCTTTCCAGCACTTCCTTGTTTTCGTGGAAGTAGTGCTTTATTCAAACGCATTTGTCGTTTGTTTCTGCGCTGTGTCTGGACACTCAGATGCACTCTTTCACATGTCTTTTGGACATGTTTGCTGCATGTCCATTGTATAAAATCCACCAAATCCATATGactgatattgattttttttttttttaatgttgctaAACAAACTGAGGAGGAAGCGGAAGCTTAAGGAACTGCCAACTTTCGGTTGTTATTGGTTTGTTCATGGACTAGTGAATAGGATAATGTCTGGTTCATAAACAACTTGGCAACTGactaaatgtgtgtaatatcaTGGTGCTTCCGATCTGTCTGTAAAATCAGACTGTGGAGACATTTTGATCATTCACGATCTAAAATCATCAGATCACCCGTCCCTTTGTTCAGCAAATTTATAATTCACATAAAACCTGTTGGATAGAAAGCCACTCATGAGGTAATAAAACGTTCatgttattttctgtttgtcCTGTGTTTAAGcttactgcagctttaaaaggATTCGAGTGCTTTAGCCTGCAAAAGAGCTCAGGAAAGTGGAGCTACATTATAACAACTGCACCACACATTGCAGTATAACCCAAAATCTGGCTTTATTTTATCACTCACATCTGTGCGTTTAAAGTGCATGTTCAGGGTTGATCTGATTTGTTCATTAAATACGTATTGATATATCGCACAGATTAGTCCGGCTCACACGTATTCAAAACACAAGCTTGTAAATCACTGGTGGACGCATCTTTAgtccaggacaagcagattacatgtctgggctatgaaTGTTCTCGTTGTAGTTGCCTGGAGGACAAGCAAGTTCTGCTGACTGCTGATTTATTTCCTACCAGCGTTCTCTCTTCCaccagttaaaaaaacaaaaataaccaaaacaGTGGTTCGTACgtgatgtgtgtatttaaacATAACATGCTCCAGTTGGTTTATATATTTCATGCATTACCTGCATGCGCTTCTCATTCCCAAATCCTGCCACCTGCTAAACTACACACAGCAACCCAAGATACATTCTGAccataagaaatattttaaataatttaatgcatttgttAAGTACATATGAAAAACACtcgtgttttttttattatttaatgaatcAGCATCACACAGATATGTGGAAACAGTGTCTAGTTATTTTGTGTAACAGAAATACGTATAAAATAAGCTAAATATGAATGCTGGGTAGTAGGTGTtcattaatttcctataacagcagctctgaacgtagtgccagctgcaaggttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301398 True 3804 lncRNA 0.39 2 13692797 13696620

Neighbor

gene id symbol gene type direction distance location
sla2 sla2 coding downstream 60776 13625898 ~ 13632021 (-)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683 coding downstream 241423 13440784 ~ 13451374 (-)
myt1b myt1 coding downstream 663910 12995420 ~ 13028887 (-)
LOC113530792 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232 coding downstream 705660 12975444 ~ 12987137 (-)
slco4a1 slco4a1 coding downstream 1037976 12615024 ~ 12654821 (-)
phf20b phf20,LOC107594424 coding upstream 3816 13700436 ~ 13721730 (-)
si:ch211-218g4.2 LOC108275877,LOC108429303,LOC107724193,LOC107696985 coding upstream 36468 13733088 ~ 13813355 (-)
sulf2b sulf2,sulf2b,LOC108429304,LOC107724188,LOC107705722,LOC107693554,LOC107551524 coding upstream 118218 13814838 ~ 13947569 (-)
eef1a2 eef1a2,LOC108276238,LOC107724190,LOC107705720,LOC108429306,LOC107696983,LOC107551525,LOC107693560 coding upstream 339180 14035800 ~ 14042467 (-)
mrgbp mrgbp coding upstream 345952 14042572 ~ 14048229 (-)
G254599 NA non-coding downstream 27324 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 78134 13614428 ~ 13614663 (-)
G254568 cables2 non-coding downstream 101827 13590500 ~ 13590970 (-)
G254270 NA non-coding downstream 204304 13428290 ~ 13488493 (-)
LOC117599295 NA non-coding downstream 227582 13464191 ~ 13465215 (-)
G254567 NA non-coding upstream 3389 13700009 ~ 13700405 (-)
G255020 NA non-coding upstream 834205 14530825 ~ 14532588 (-)
G255306 NA non-coding upstream 1179024 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 1483766 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 1485537 15182157 ~ 15227960 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 408912 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 758489 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1525002 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 1833451 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 2124194 11549394 ~ 11568603 (-)
LOC113530423 LOC108276099 other upstream 432343 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 1002652 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1561865 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 1961716 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 2951203 16647823 ~ 16695031 (-)

Expression


Co-expression Network