G255058


Basic Information

Item Value
gene id G255058
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14705697 ~ 14706521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU301929
aaacaatcaagatgtaatcgaagtgtagactttcagctttattttaagaggttccacaaaaatatggcgattaccatttaggaattacagccattttaagcaaagtacctccattttcaggggctcaaaggtatttggacaattgactgacaagaagttaattgaccaggtgcggtccattccctcattacttcaagacaagtgaagcagataaaaggtctggagttgatatcaggtattgagttggcatttggcagctgttcgactggagctaccaatatgaagtccaaggagatctcaatgcaagtgaaggaggccatcattaggctgaaaaaacaacataaatctataagagagatagaaaaaaccttaggtgtggccaaatcaacagttgggtacattcttaaaaagaaagaaagcactggtgagctcaacaacatcgaaaggtctggaagaccatggaagacaaccaaagtggatgatcgcagaatcctttccttggtgaagaaaaaaacccttcacaacatcaacagaagtcaagaatagtctggagaaggtaggcgtatcattgtcaaaatctaaaatcaagagacgccttcatgaatataaatacagagggtttacaacaaggtgcaaaccaatggtaacattcaagaacaggaaagccagattagactttgccagaaaacagctaaaaaagcctcccatgttctggaataagattctttggactaatgaaaccaagattaacttttaccagaatgatgggaagaatGTACcaaaatgatgggaagagaaaagtatggtgaaagaaaggaacagctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301929 True 825 lncRNA 0.39 1 14705697 14706521

Neighbor

gene id symbol gene type direction distance location
krt8 krt8,LOC100304655,LOC108411779,LOC107705700,LOC107666368,LOC102212080,LOC100702817 coding upstream 1617 14699254 ~ 14704080 (+)
foxp1a foxp1,foxp1a,LOC108275860,LOC107551537 coding upstream 131387 14530835 ~ 14574310 (+)
eif4e3 eif4e3,LOC107666244,LOC107568047,LOC107705706,LOC107681400,LOC107727004 coding upstream 176979 14520259 ~ 14528718 (+)
rybpa LOC108276139 coding upstream 197267 14491176 ~ 14508430 (+)
cntn3a.2 cntn3a.2,LOC108275552,LOC108438229,LOC107727029,LOC107681399,LOC107705655 coding upstream 265360 14364413 ~ 14440337 (+)
LOC113530635 krt4,LOC108276093,LOC108429286,LOC108429265,LOC102790234 coding downstream 25073 14731594 ~ 14735982 (+)
plxnb1a plxnb1a,LOC108275501 coding downstream 48032 14754553 ~ 14822158 (+)
si:ch211-220i18.4 LOC108275527 coding downstream 119061 14825582 ~ 14834227 (+)
prkcbp1l LOC108276073 coding downstream 142034 14848555 ~ 14864652 (+)
mapre1b mapre1b,LOC100304488,LOC108429292,LOC107559863,LOC107666429 coding downstream 161771 14868292 ~ 14876903 (+)
G255057 NA non-coding upstream 161 14705268 ~ 14705536 (+)
G254966 NA non-coding upstream 90423 14607079 ~ 14615274 (+)
G254967 LOC108276138 non-coding upstream 227988 14443189 ~ 14477709 (+)
G254653 NA non-coding upstream 637234 14068259 ~ 14068463 (+)
G254644 NA non-coding upstream 649735 14055216 ~ 14055962 (+)
G255189 NA non-coding downstream 172391 14878912 ~ 14879327 (+)
G255209 NA non-coding downstream 290304 14996825 ~ 15002630 (+)
G255198 NA non-coding downstream 347588 15054109 ~ 15054471 (+)
G255218 NA non-coding downstream 387292 15093813 ~ 15095619 (+)
LOC117599280 NA non-coding downstream 469063 15175584 ~ 15177222 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 31745 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 633481 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 1735688 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 1851317 12837051 ~ 12854380 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other upstream 2319701 12366613 ~ 12385996 (+)
rps21 rps21,LOC107666483 other downstream 410549 15117070 ~ 15167668 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 1503569 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 1525492 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 1657025 16363546 ~ 16396245 (+)
G256046 NA other downstream 1801504 16508025 ~ 16508380 (+)

Expression


Co-expression Network