G255189


Basic Information

Item Value
gene id G255189
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14878912 ~ 14879327 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302078
CTCCTACATTGTAGATATTAACCAGGTAAGTGTGTGGTACAAATGCAAAAAGAATTGGTTGACCTAATCTGATGCTGTTCTTAAAGAAAACTATCCCATGGTGTAACTCACTGTGTTGTAAGAAATGTAAACAATATagtgcatttaataaaatactaataataagaAAGTGTAACTGCAGTTCTAATGACACTTTTGCATTTAGTTCACAGGAACAGCTTCTTTCTTGCAATGcttccaaacagcttgttgatTTTGAAACAGGACAACCACAAGAATAAAGTAAACTGGAATTCTAACACTGCAATCCTTGGGCTCTCTTTTCCCGCCTTCGATATCCCCCTCTCTGTGGGGAGACAGAGTGCTCAGGGTCTGATTCCTGGCAAATTTCCaacatgtgaaaatgtcttATAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302078 True 416 lncRNA 0.38 1 14878912 14879327

Neighbor

gene id symbol gene type direction distance location
mapre1b mapre1b,LOC100304488,LOC108429292,LOC107559863,LOC107666429 coding upstream 2009 14868292 ~ 14876903 (+)
prkcbp1l LOC108276073 coding upstream 14260 14848555 ~ 14864652 (+)
si:ch211-220i18.4 LOC108275527 coding upstream 44685 14825582 ~ 14834227 (+)
plxnb1a plxnb1a,LOC108275501 coding upstream 56754 14754553 ~ 14822158 (+)
LOC113530635 krt4,LOC108276093,LOC108429286,LOC108429265,LOC102790234 coding upstream 142930 14731594 ~ 14735982 (+)
lama5 lama5 coding downstream 20303 14899630 ~ 14972991 (+)
soga1 soga1 coding downstream 128794 15008121 ~ 15052391 (+)
ddx23 ddx23 coding downstream 484829 15364156 ~ 15391163 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding downstream 520479 15399806 ~ 15405647 (+)
LOC113530581 NA coding downstream 640015 15519342 ~ 15540730 (+)
G255058 NA non-coding upstream 172391 14705697 ~ 14706521 (+)
G255057 NA non-coding upstream 173376 14705268 ~ 14705536 (+)
G254966 NA non-coding upstream 263638 14607079 ~ 14615274 (+)
G254967 LOC108276138 non-coding upstream 401203 14443189 ~ 14477709 (+)
G254653 NA non-coding upstream 810449 14068259 ~ 14068463 (+)
G255209 NA non-coding downstream 117498 14996825 ~ 15002630 (+)
G255198 NA non-coding downstream 174782 15054109 ~ 15054471 (+)
G255218 NA non-coding downstream 214486 15093813 ~ 15095619 (+)
LOC117599280 NA non-coding downstream 296257 15175584 ~ 15177222 (+)
G255229 NA non-coding downstream 350406 15229733 ~ 15239236 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 204960 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 806696 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 1908903 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 2024532 12837051 ~ 12854380 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other upstream 2492916 12366613 ~ 12385996 (+)
rps21 rps21,LOC107666483 other downstream 237743 15117070 ~ 15167668 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 1330763 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 1352686 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 1484219 16363546 ~ 16396245 (+)
G256046 NA other downstream 1628698 16508025 ~ 16508380 (+)

Expression


Co-expression Network