G255227 (LOC108275774)


Basic Information

Item Value
gene id G255227
gene name LOC108275774
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15247697 ~ 15257735 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302134
TGTTGCGAGGGACAGGGATATGAGAGGATGCATAGATCTCCTCTGCTGaaacatctgtaacacacagtgGCAACATGCTCCTTAATGAAATTATGGACTCCACTTGCATGTGGTCCTCTTGCCTTTGTCCATTCAGGATCAAGCGATGAGTAAAACTTCTGCACTTCAGGACCTCTCCTGGACCCACCTCCCTCTGATCCTCCTCACTTGCATAGATggtcTTTTTTTGGTGTAGTGCTTCTCTCGACCTGAAGCCAACTGGTTTCCACTAGGACACGTTTCTTTGCTAGGCTCTTGCAGGGAGCACGTATCCACTATTTGGGTGTCAATCCCGTTTACCGTTACGGGTGATTTCTTTCTGGTGATGACTCCGCCTGTCTTCGCTGCAAAATGCTCGCTGTGTTTAGTGCAGTAGTTTCCCGCATACCCGATGCTACCGGCGCCGCTCCCTCTCACGCCGGCTGGGTTCTTATCGAGGAGGCGCTTCGAAGTCATTTTCAAACAGGCCAAGTGCATCTAAAGAAGGATAAGATGTCGGCAGATTCTACAGCCTAACAAGGaaagatacatttaaaatgactcTGCTGACTACAAAGCCCAGTTATTTCGGCGGAGGCACTAAATAGTACTACCAGTCTAAAACAACCCAAAATACAGCCGGTAAAGGGAATAGCTCAAACGATTGTTTTGCTTTTCTCCCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302134 True 703 lncRNA 0.48 2 15247697 15257735

Neighbor

gene id symbol gene type direction distance location
soga1 soga1 coding upstream 195306 15008121 ~ 15052391 (+)
lama5 lama5 coding upstream 274706 14899630 ~ 14972991 (+)
mapre1b mapre1b,LOC100304488,LOC108429292,LOC107559863,LOC107666429 coding upstream 370794 14868292 ~ 14876903 (+)
prkcbp1l LOC108276073 coding upstream 383045 14848555 ~ 14864652 (+)
si:ch211-220i18.4 LOC108275527 coding upstream 413470 14825582 ~ 14834227 (+)
ddx23 ddx23 coding downstream 106421 15364156 ~ 15391163 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding downstream 142071 15399806 ~ 15405647 (+)
LOC113530581 NA coding downstream 261607 15519342 ~ 15540730 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding downstream 637908 15895643 ~ 15943003 (+)
edem2 edem2,LOC107697010 coding downstream 719161 15976896 ~ 16034838 (+)
G255229 NA non-coding upstream 8461 15229733 ~ 15239236 (+)
LOC117599280 NA non-coding upstream 70475 15175584 ~ 15177222 (+)
G255218 NA non-coding upstream 152078 15093813 ~ 15095619 (+)
G255198 NA non-coding upstream 193226 15054109 ~ 15054471 (+)
G255209 NA non-coding upstream 245067 14996825 ~ 15002630 (+)
G255507 NA non-coding downstream 197220 15454955 ~ 15455317 (+)
G255645 uckl1 non-coding downstream 354190 15611925 ~ 15623220 (+)
G255649 NA non-coding downstream 395111 15652846 ~ 15657627 (+)
G255650 NA non-coding downstream 400042 15657777 ~ 15658142 (+)
LOC113530859 NA non-coding downstream 565553 15823288 ~ 15825452 (+)
rps21 rps21,LOC107666483 other upstream 80029 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 573745 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1175481 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 2277688 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 2393317 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 952355 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 974278 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 1105811 16363546 ~ 16396245 (+)
G256046 NA other downstream 1250290 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1813401 17071136 ~ 17124951 (+)

Expression


Co-expression Network