G255403


Basic Information

Item Value
gene id G255403
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15180386 ~ 15180640 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302322
tgtaatatgtatttgAGTCACCAGTTTTAAATTGAAAATCTCTCTGTAGTTAATTAGGATGCACAGTTGATGTTTTAGCATGTTGCTATAGATCAATATAGAAGTCATAAAGTGCACATGGTGAAATATGATGGAATATGTACAGCTAAGCCTCACCTCTTCCTTTCCTCTGTGGTTTCAACACATACTCGTATGATTTGGCCAAAGCCATAGCCACATTCTGGGgatttttcttaataatttcTGCATTCttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302322 True 255 lncRNA 0.35 1 15180386 15180640

Neighbor

gene id symbol gene type direction distance location
gss gss,LOC107594436 coding downstream 39407 15125347 ~ 15140979 (-)
acss2 acss2,LOC108438110,LOC107666475 coding downstream 63760 15093797 ~ 15116626 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding downstream 177709 14981346 ~ 15002677 (-)
adrm1 adrm1,LOC106534082,LOC103354471,LOC105894265,LOC107727009,LOC108276396 coding downstream 201098 14973016 ~ 14979288 (-)
slc16a7 LOC108276076,LOC108429289 coding downstream 333371 14840288 ~ 14847015 (-)
si:rp71-79p20.2 LOC108275774 coding upstream 6758 15187398 ~ 15257751 (-)
birc7 LOC108275549 coding upstream 159356 15339996 ~ 15357857 (-)
lmod3 lmod3 coding upstream 231530 15412170 ~ 15451350 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding upstream 274878 15455518 ~ 15561114 (-)
LOC113530990 NA coding upstream 307117 15487757 ~ 15487859 (-)
G255306 NA non-coding downstream 301880 14875644 ~ 14878506 (-)
G255020 NA non-coding downstream 647798 14530825 ~ 14532588 (-)
G254567 NA non-coding downstream 1479981 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 1483766 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 1514913 13664893 ~ 13665473 (-)
G255385 NA non-coding upstream 1517 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 151486 15332126 ~ 15332451 (-)
G255506 NA non-coding upstream 273493 15454133 ~ 15454354 (-)
G255693 NA non-coding upstream 472207 15652847 ~ 15657703 (-)
G255772 NA non-coding upstream 662951 15843591 ~ 15849718 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 476116 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 1029805 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 1896501 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 2246078 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 3012591 12155728 ~ 12167795 (-)
LOC113530775 NA other upstream 77845 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 477696 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 1467183 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 1607161 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 1672288 16852928 ~ 16871164 (-)

Expression


Co-expression Network