G255506


Basic Information

Item Value
gene id G255506
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15454133 ~ 15454354 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302438
gatcagaccagacggactagccttcactccacacatgcatcagtgagccttgggcgcccatgaccctgttgctagttcactggttgtccttccttggaccacttttggtaggtactaaccactgcataccaggaacgccccacaagacctgccgttttaaagatgctctgacccagtcatctagccatcacaatttggccattgtcaaagtctctctaatcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302438 True 222 lncRNA 0.51 1 15454133 15454354

Neighbor

gene id symbol gene type direction distance location
lmod3 lmod3 coding downstream 2783 15412170 ~ 15451350 (-)
birc7 LOC108275549 coding downstream 96276 15339996 ~ 15357857 (-)
si:rp71-79p20.2 LOC108275774 coding downstream 196382 15187398 ~ 15257751 (-)
gss gss,LOC107594436 coding downstream 313154 15125347 ~ 15140979 (-)
acss2 acss2,LOC108438110,LOC107666475 coding downstream 337507 15093797 ~ 15116626 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding upstream 1164 15455518 ~ 15561114 (-)
LOC113530990 NA coding upstream 33403 15487757 ~ 15487859 (-)
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding upstream 153931 15608285 ~ 15652605 (-)
sars1 sars,LOC107697960,LOC107671868 coding upstream 1119672 16574026 ~ 16587748 (-)
si:ch211-207e14.4 LOC108276234 coding upstream 1187106 16641460 ~ 16647701 (-)
G255435 NA non-coding downstream 121682 15332126 ~ 15332451 (-)
G255385 NA non-coding downstream 226173 15182157 ~ 15227960 (-)
G255403 NA non-coding downstream 273493 15180386 ~ 15180640 (-)
G255306 NA non-coding downstream 575627 14875644 ~ 14878506 (-)
G255020 NA non-coding downstream 921545 14530825 ~ 14532588 (-)
G255693 NA non-coding upstream 198493 15652847 ~ 15657703 (-)
G255772 NA non-coding upstream 389237 15843591 ~ 15849718 (-)
G255781 NA non-coding upstream 426937 15881291 ~ 15881909 (-)
LOC113530984 NA non-coding upstream 429521 15883875 ~ 15890989 (-)
G255796 NA non-coding upstream 439062 15893416 ~ 15894786 (-)
LOC113530775 NA other downstream 136768 15258485 ~ 15317365 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 749863 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 1303552 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 2170248 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 2519825 12897474 ~ 12934308 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 203982 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 1193469 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 1333447 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 1398574 16852928 ~ 16871164 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 2429889 17884243 ~ 17913277 (-)

Expression


Co-expression Network