G255507


Basic Information

Item Value
gene id G255507
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15454955 ~ 15455317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302439
TTAAGTTGAGTCTAAATTTTACTTATGGCTTcatacttttttcatttaatcatGTACCCAAACAGATTGCAGTTTTTCATCAGGACTGATATTTGTCCCACATTAAACTTGTAGACAAATGCAGGTGAACAGTCATGAGCAGAAAAGTCAAAGCAATGTGtcaaaaacatacacaacaccaaattatacaatttttgtgatttctacagaAACTATTCATTGTAATGTTATACAATAGAAAATATGGCTCACACCATAAAATATAAGTTATAAGTTGAGTTCATACAAAGCATTCTTTtatgtgtatgtacacacacacacacacacacacacacatatatatatatatatgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302439 True 363 lncRNA 0.31 1 15454955 15455317

Neighbor

gene id symbol gene type direction distance location
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 49308 15399806 ~ 15405647 (+)
ddx23 ddx23 coding upstream 63792 15364156 ~ 15391163 (+)
soga1 soga1 coding upstream 402564 15008121 ~ 15052391 (+)
lama5 lama5 coding upstream 481964 14899630 ~ 14972991 (+)
mapre1b mapre1b,LOC100304488,LOC108429292,LOC107559863,LOC107666429 coding upstream 578052 14868292 ~ 14876903 (+)
LOC113530581 NA coding downstream 64025 15519342 ~ 15540730 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding downstream 440326 15895643 ~ 15943003 (+)
edem2 edem2,LOC107697010 coding downstream 521579 15976896 ~ 16034838 (+)
baz2a baz2a coding downstream 603995 16059312 ~ 16173060 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 1134073 16589390 ~ 16620443 (+)
G255227 LOC108275774 non-coding upstream 197220 15247697 ~ 15257735 (+)
G255229 NA non-coding upstream 215719 15229733 ~ 15239236 (+)
LOC117599280 NA non-coding upstream 277733 15175584 ~ 15177222 (+)
G255218 NA non-coding upstream 359336 15093813 ~ 15095619 (+)
G255198 NA non-coding upstream 400484 15054109 ~ 15054471 (+)
G255645 uckl1 non-coding downstream 156608 15611925 ~ 15623220 (+)
G255649 NA non-coding downstream 197529 15652846 ~ 15657627 (+)
G255650 NA non-coding downstream 202460 15657777 ~ 15658142 (+)
LOC113530859 NA non-coding downstream 367971 15823288 ~ 15825452 (+)
G255780 NA non-coding downstream 426069 15881386 ~ 15881865 (+)
rps21 rps21,LOC107666483 other upstream 287287 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 781003 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1382739 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 2484946 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 2600575 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 754773 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 776696 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 908229 16363546 ~ 16396245 (+)
G256046 NA other downstream 1052708 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1615819 17071136 ~ 17124951 (+)

Expression


Co-expression Network