LOC113530859


Basic Information

Item Value
gene id LOC113530859
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15823288 ~ 15825452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302647
CCCTTCACTCCGTCCCCCTACAGCTTGCTGGCAGTGTCTTTCCAATATGGAGTATTTTTTATTACCAATGAAGGAATGAAGCTGGACATAGGGAATTAGCAATGTTGCTCCTGGACAGGTCCTGTGGCAGAACTTTGTGGACAAGGGCGGGAGTTGGGACGGgtttaagggggaaaaaaatcaaatgttggACCCACCCAAATcgccaacaacaacaaagtttTCAGATGTGCAGGACTCTGCTCGGAGTCGTTATCACACAGCGAGTTCGGCACAGAGCTGGCAGGAAGTCACACTCTGACCCAGTGACACACAGCATCAGTTTGAAGCTGGTGATCGACTTCAGCCCGACTCGTGTATGTCTTCCTGTGTTCCACGGCACTGAATGGAATCGTCTGCGCgagacacacacctgcactttgTTACTTCATATCTGAACTTATTATAAAGTTGCTAAAGCATGCAGCACTACGACACAGAATTAATCACTGTTCTAAAGTATTGTGCCCAGAAGCcttattataaaaatgaaatgacctTCAAGGCAACACATAACGATATTTATAATATCGTTAATACCTTCAgttctaaatgaaaaatgttttcttcgGTATGGGATGACTGTATGCCTGACCTAATGGGTAAATTGTTAAACACGTGACCtataaatgagatgaaaaaTAGCATCTCTGTTTCTTTCACCAACCATAATCAGCTCAATATGTTTCTTTGGTCATACATACAAAACATATAGATAAAACAGTGTTATTGGATATTTCAGGTTGTAATTGGCAGAGATGTTCTGGCAAAGTAATCTGAGTATATGCAAGGATCAAACCATAGACTGACAGTTACAGCTAGAGCACAATAGATAGAGTACCTTTTATTCTATTATGTTTAAGGGGGTTTGactacaaattattatttttttctttttactttctgaTAAATAGCAAGACACCATGAGTCAATCACTTGCACACTTTCAGCACAATACAATTGAAAAAGATTTTACCTCTGTGTGGTAGTATTGAATGAGCCAAATACACGGAGGCATCatgataaaataacagaaaatcaTTACAGTTGCAAAAGAAAAGGAACCTTGTCAAACATATGTTCATAATAAATTGCAAAAAGCAATATGTTTCTATGCTATACACCAAAACTGAGGGTGAGTGAT
>XR_003403187.2
CCTTCACTCCGTCCCCCTACAGCTTGCTGGCAGTGTCTTTCCAATATGGAGTATTTTTTATTACCAATGAAGGAATGAAGCTGGACATAGGGAATTAGCAATGTTGCTCCTGGACAGGTCCTGTGGCAGAACTTTGTGGACAAGGGCGGGAGTTGGGACGGgtttaagggggaaaaaaatcaaatgttggACCCACCCAAATcgccaacaacaacaaagtttTCAGATGTGCAGGACTCTGCTCGGAGTCGTTATCACACAGCGAGTTCGGCACAGAGCTGGCAGGAAGTCACACTCTGACCCAGTGACACACAGCATCAGTTTGAAGCTGGTGATCGACTTCAGCCCGACTCGTGTATGTCTTCCTGTGTTCCACGGCACTGAATGGAATCGTCTGCGCgagacacacacctgcactttgTTACTTCATATCTGAACTTATTATAAAGTTGCTAAAGCATGCAGCACTACGACACAGAATTAATCACTGTTCTAAAGTATTGTGCCCAGAAGCcttattataaaaatgaaatgacctTCAAGGCAACACATAACGATATTTATAATATCGTTAATACCTTCAgttctaaatgaaaaatgttttcttcgGTATGGGATGACTGTATGCCTGACCTAATGGGTAAATTGTTAAACACGTGACCtataaatgagatgaaaaaTAGCATCTCTGTTTCTTTCACCAACCATAATCAGCTCAATATGTTTCTTTGGTCATACATACAAAACATATAGATAAAACAGTGTTATTGGATATTTCAGGTTGTAATTGGCAGAGATGTTCTGGCAAAGTAATCTGAGTATATGCAAGGATCAAACCATAGACTGACAGTTACAGCTAGAGCACAATAGATAGAGTACCTTTTATTCTATTATGTTTAAGGGGGTTTGactacaaattattatttttttctttttactttctgaTAAATAGCAAGACACCATGAGTCAATCACTTGCACACTTTCAGCACAATACAATTGAAAAAGATTTTACCTCTGTGTGGTAGTATTGAATGAGCCAAATACACGGAGGCATCatgataaaataacagaaaatcaTTACAGTTGCAAAAGAAAAGGAACCTTGTCAAACATATGTTCATAATAAATTGCAAAAAGCAATATGTTTCTATGCTATACACCAAAACTGAGGGTGAGTGATTTGAGAGTCTCCTTATATCTCAATGAGATGTTTGAGCAAGTGCTCTGAATTAAACTAAATATGTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302647 False 1183 lncRNA 0.39 2 15823288 15825384
XR_003403187.2 True 1250 lncRNA 0.39 2 15823289 15825452

Neighbor

gene id symbol gene type direction distance location
LOC113530581 NA coding upstream 282558 15519342 ~ 15540730 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 417641 15399806 ~ 15405647 (+)
ddx23 ddx23 coding upstream 432125 15364156 ~ 15391163 (+)
soga1 soga1 coding upstream 770897 15008121 ~ 15052391 (+)
lama5 lama5 coding upstream 850297 14899630 ~ 14972991 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding downstream 70191 15895643 ~ 15943003 (+)
edem2 edem2,LOC107697010 coding downstream 151444 15976896 ~ 16034838 (+)
baz2a baz2a coding downstream 233860 16059312 ~ 16173060 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 763938 16589390 ~ 16620443 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 969848 16795300 ~ 16823847 (+)
G255650 NA non-coding upstream 165146 15657777 ~ 15658142 (+)
G255649 NA non-coding upstream 165661 15652846 ~ 15657627 (+)
G255645 uckl1 non-coding upstream 200068 15611925 ~ 15623220 (+)
G255507 NA non-coding upstream 367971 15454955 ~ 15455317 (+)
G255227 LOC108275774 non-coding upstream 565553 15247697 ~ 15257735 (+)
G255780 NA non-coding downstream 55934 15881386 ~ 15881865 (+)
G255798 NA non-coding downstream 123761 15949213 ~ 15949589 (+)
G255809 NA non-coding downstream 217703 16043155 ~ 16048021 (+)
LOC117599274 NA non-coding downstream 223110 16048562 ~ 16052382 (+)
G255815 NA non-coding downstream 352685 16178137 ~ 16181020 (+)
rps21 rps21,LOC107666483 other upstream 655620 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 1149336 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1751072 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 2853279 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 2968908 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 384638 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 406561 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 538094 16363546 ~ 16396245 (+)
G256046 NA other downstream 682573 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1245684 17071136 ~ 17124951 (+)

Expression


Co-expression Network