G255809


Basic Information

Item Value
gene id G255809
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16043155 ~ 16048021 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302796
TTTTTGAAGTACAAATCTCCTGCCCACACATCTGTCTTTCCTTGAAACCCAGAGGTTCTGCACAAAGTTTGGGTCCTATGGTTTTGGCAATGATACAAATGAAAGTTCTAAGTGTGAGACTGATACAGGCACTTTTTGTACTCTAAGTGAGACACAATACTTGTTGCACGATATAAGAGGCGCACTCACATTGCATGATATAACAGTCGCACACACAGCCCACTGAACTTAGTGTAATACCAATATTGACATCTGCCCACCTCCTATGCTGTCTGTGCTTGACACTAAGTTGTGGGCTAAGCACATAGGTCTTGTTTCATCTGCTAAACCACATGCAGTCACACTTAAGCCTGGAGTCCTGCTGCCATACAAGAAACAATACTACTGAGCCCCATATGCTGTTGAAGGGATACAGCCAGTTATTTCCTCATTACAAGGCATCCTAATAGAGACAAAAATTCTCTGTTAATCAGATAATACTCCTATCATGCCCTTTGTACATGACACAAATATGATTCTTTTTCTATCCTAGTTACTGCTATGCATCTTACTGCTATGCATAAAAAGGCCTGTATTCTGCCTTTTTCTCAATTCTGGTGCATCCAGATAGTTAGATTCTGTTTGCTTTTACATATGATATTAAGCAATACACAAGACTGGCAGGGCTATACAGAGTCCAGCTGTTTATGCAGCCACTGTTAAAAGGGACTTAGAGGCTTTGGACATGTCTGACAGAACAGTTTTCGATCCAATATGCAGATGACATACTTCTACAAACAATGATGCATGTGTTACAGACTCATTGAAACTCCTCTCTGCATTAGCTGACAAAAGTCATCACACCTTTTTGGCCAAGTAGCAGTTTGCACAGCCTCAGGTACAATACTTAAGCCATATTCCTGTCAGAAGGGACAGCGATCCATCGCCCCAGAGTAAATGAAGGAGCTACAAAGCCTGCCTGTGCCTAAAACCAAGAAGGACATGATATCCTTTCTGGGTTTGGTAAATTACTGCTGTCACAGGATCCCTGACTTTGCTGTTCAAGCACTTAGAAAGACCAAGCACTGGTCAGATGCCATGCACACAGCCTTTTGCTCCTCATATCTGTTAATAATAAGGCTATGCCACGGGGGTGCTCACTCAGAAACACAGCACCCACATGAGACCTGTGGCCTACTACTCTTTGAAACTCAGCCCCGCAAGGTATGGATATTTTCTATCTTCTGGAGTGATTCTTTCTTCTCATATTACTGTACAGCATGCACAACCACTTAACCCTGCTACTCTTCTTCCAGTTtcagatgatgatgacgacaCACTGTTGCATGACTACTGTGCCTTGGTTCATGAGAACTACAGGTACTGATGGGGAGACCGGTGAACTTGTCATCTGCAGTGCATCAACTTCCACTGAGGAGAGGCTGACTTTACTgtaaaggagcagacctggagggttcacaggcatagagtgttgtggtgaactggaatgtttggatgctgttgtgCCCCCGCCCCCCCATTCTcatgcgttcactcagctacacatgctactcctgagataccagtgatcctgaccccttctgctctctggacctgcctgatccatcctgatgccctacttctggttggagttctcattggttggagatcgctcactgctgctgggggtggccccacatggacggcctgtaGATCATTGGCATTGCTGAGGATGGTGTCACTTAGGGGCCGTGGAGATGTACTGTGATgacttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302796 True 1755 lncRNA 0.45 4 16043155 16048021

Neighbor

gene id symbol gene type direction distance location
edem2 edem2,LOC107697010 coding upstream 8317 15976896 ~ 16034838 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding upstream 100152 15895643 ~ 15943003 (+)
LOC113530581 NA coding upstream 502425 15519342 ~ 15540730 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 637508 15399806 ~ 15405647 (+)
ddx23 ddx23 coding upstream 651992 15364156 ~ 15391163 (+)
baz2a baz2a coding downstream 11291 16059312 ~ 16173060 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 541369 16589390 ~ 16620443 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 747279 16795300 ~ 16823847 (+)
bin2a bin2 coding downstream 782545 16830566 ~ 16846985 (+)
pou6f1 pou6f1 coding downstream 824842 16872863 ~ 16914072 (+)
G255798 NA non-coding upstream 93566 15949213 ~ 15949589 (+)
G255780 NA non-coding upstream 161290 15881386 ~ 15881865 (+)
LOC113530859 NA non-coding upstream 217703 15823288 ~ 15825452 (+)
G255650 NA non-coding upstream 385013 15657777 ~ 15658142 (+)
G255649 NA non-coding upstream 385528 15652846 ~ 15657627 (+)
LOC117599274 NA non-coding downstream 541 16048562 ~ 16052382 (+)
G255815 NA non-coding downstream 130116 16178137 ~ 16181020 (+)
G256044 NA non-coding downstream 457041 16505062 ~ 16505504 (+)
G256045 NA non-coding downstream 458756 16506777 ~ 16507014 (+)
G256049 NA non-coding downstream 524674 16572695 ~ 16574471 (+)
rps21 rps21,LOC107666483 other upstream 875487 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 1369203 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1970939 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 3073146 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 3188775 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 162069 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 183992 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 315525 16363546 ~ 16396245 (+)
G256046 NA other downstream 460004 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1023115 17071136 ~ 17124951 (+)

Expression


Co-expression Network