G255846


Basic Information

Item Value
gene id G255846
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15948239 ~ 15948629 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302834
CTAAATATGACCCTACACACAAAACGGTGAACAGTGACATTACAAAACAAATGTATGCTGTGTAATTTCAGATTATCAAATAAACAAGAATATATGTAGGATTACAGGCatgaaatatacaaatataaatttaaattacaagAATTTACCCAATGTACAAGACTGTGCAATTGGCCTAAAAATTAACACGTAGTTAAATCTTCAGTCAGTGGAACAATATTGTCCTCCAAACCCCACACCCCCTTATGCGGTGAGCGTTCCAAACACCCTGTAAGGCATTTAACTTCTCCTATTAAAGAAACATGAACAATTAACACAGAAATTGTTTGAATAGTGTACAAATTTCATTCACTGATAATATCAAAGTAGGGACCCAGGGACCCGATCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302834 True 391 lncRNA 0.35 1 15948239 15948629

Neighbor

gene id symbol gene type direction distance location
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding downstream 295634 15608285 ~ 15652605 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding downstream 387125 15455518 ~ 15561114 (-)
LOC113530990 NA coding downstream 460380 15487757 ~ 15487859 (-)
lmod3 lmod3 coding downstream 496889 15412170 ~ 15451350 (-)
birc7 LOC108275549 coding downstream 590382 15339996 ~ 15357857 (-)
sars1 sars,LOC107697960,LOC107671868 coding upstream 625397 16574026 ~ 16587748 (-)
si:ch211-207e14.4 LOC108276234 coding upstream 692831 16641460 ~ 16647701 (-)
cs cs,LOC107707042,LOC107671863,LOC107697968 coding upstream 759561 16708190 ~ 16762693 (-)
rapgef3 LOC108275659,LOC108425525 coding upstream 1176390 17125019 ~ 17171019 (-)
LOC113530577 NA coding upstream 1260256 17208885 ~ 17226734 (-)
G255845 NA non-coding downstream 187 15947850 ~ 15948052 (-)
G255837 prpf6 non-coding downstream 39921 15906104 ~ 15908318 (-)
G255796 NA non-coding downstream 53453 15893416 ~ 15894786 (-)
LOC113530984 NA non-coding downstream 57250 15883875 ~ 15890989 (-)
G255781 NA non-coding downstream 66330 15881291 ~ 15881909 (-)
G255851 NA non-coding upstream 2926 15951555 ~ 15951961 (-)
G255872 NA non-coding upstream 28291 15976920 ~ 15999160 (-)
G255868 NA non-coding upstream 43625 15992254 ~ 16035278 (-)
G255871 NA non-coding upstream 160991 16109620 ~ 16191399 (-)
G255884 NA non-coding upstream 185832 16134461 ~ 16135059 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 127998 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 630874 15258485 ~ 15317365 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 1243969 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 1797658 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 2664354 13251140 ~ 13283885 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 699194 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 839172 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 904299 16852928 ~ 16871164 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 1935614 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 2336857 18285486 ~ 18300687 (-)

Expression


Co-expression Network