spo11 (spo11)


Basic Information

Item Value
gene id spo11
gene name spo11
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16232013 ~ 16326614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302907
AAACCGCGCCATCTTGTGCAACTAGCCAATTGAGACATGGCTAAGCAGTATTCCCAGGTAGACATACTACGAGTTGAGTTGTTGCAAAATCTTGAAGATGCTGGGGAAACCGTAACCAGCTACTTCAGTGATGTCGCGAGGCTAGAAGTTGTGTCACGAATAGAAGAGGTTACCAAAAGGATAGTTAGCAGTTTATCGAAGGAAGAAGCACCGGTCTTGGTCTTAAAAAGCCGTTCCCGGTGGTCCAACGTGAGGCACTAAACCAACATTTCGGCTGACATCAAAAGCAGTTTGATTTACCGGCAAGGACGGGGTTGGAGCGGGCGGTGACACCAGCGCACTGGAGCTCTCAGCCCCAATTGGAGCAGGGGAGGTTACTGCAAGAGGTACTGACTTCCGACTCTGAACAGCCAGATCAAGCTTCTTCCCCTCAGCATCCAACTCCCTCTCCTGAACGCACAGCAGTTGCGTCTCATATTCCTGCCGCTTAATCTCCAACTCCAGCTTCTTCAGCTTCTTCAGCACGAGCTGCCAACCGGGGTCTGCTGCAATGGCCCGTGAGTGTTCGGGACCTACATCTGCGCCCACCCAATCTTCAGGCCGCCGCATGGGAAACCTGGATTGGGGGAGTGGTGTGGCCCGGAAGCACTTCACGCTCAGCACTGATTTTGAAGGCCCTGTCAACAATTTACAAACTTGTCCAGAGTGATTCATATGTAACCAAAAGGGATATCTATTATAATGACCCCCAGCTATTTGGATCACAGAAGACTTTGGATGCCATTGTTGATGATGTATCATGCCTGCTCAAAGTTCCTCGGAGGAGCCTACATGTGTGTGCCACTACTAAAGGATTAATCTCTGGTGATCTGTGTTACTTGGAGGAGGATGGGACAAGGGTGGACTGTAGTTCCACTGTGTTCGATTGTCTCATTCAGAGATCTACCAGGGTCTTCGGCTGGGCTGCAGTAGCTGAGGTGGATTCACAGGTTCAGTCCATCTACCTTAACTGTTGTAGCTGTTGCTAGGATTACCTTGTATAATCCTTGGACCCTTGGCTCAGCCCACTTTCTCTTGTGCATCTTCACGCAGACCCAGTCATCTGCCTTGGGCAGGTTCTCAGGCTTCACAGGTTCTTCATGAAGTTGGTTGGCCTCCTTCATCTGGTGATACAGGGACTGACGTATAGAAGAAAGTCCTTTCAAGTAGTTTGACAACTCATTCTCCAATTGCTCAAGTTATGGGCCTAGATACTCTGGTTGTGCACAGGGGATTTGCATTGGTCTTCCAGTAAGCATTTCATGTGGGGTCAAATGTGTGCTACGGTTTCTTGAGCATCTCATGCTCCTCAGGACAAGGGGCAACGCAGCTACCTACCTAGCTAATTCAGCTGtttacaaaatggctgcca
>TU302921
TTTTTGGATAATTTTCCCTGTTCCCTAAATAAGACCAGCATACAATCTCACAGATCAATGGAGAGAAGTTTTATTCTTCCTCAGTAGCAGGAGCACACCTCAGCAATACAGCAGTAGTGAGTCCACGCTCAGAGGTGTACCTCTTTTATAGTGAGGTGGAAACCATAAAACATTTCCTCATaggttacaaaataaataaaaattcataataGTATAGAAAGGATGTACATGAGTTTCTATATCTCCTCATTAGGTAATAACAGCTTAAGAAGGTGGTTCCTTATAACCTTAGGCATGTAGTATGAACAGCAACACTGACAGAATCATTATAAGAAAAGACTGTTATTACAGGAACAACATATAACAGTAAAAATTCCCAAACACTGATCTGCAAAATGGCTCATGATATCTAATAGCGAGTTCTCAAATACTATTTGTTAATCTCTGTGGATGTTAGGGAAAAGGTATGCCAGATGTCAACAGCAGGCTAATGGTGAAGAAACTATGGGAGACACTGCACATCCCTGTATTTGCCTTGGTGGATGCTGACCCACACGGGATCGAAATCATGTGCATTTATAAGTATGGATCAATTGTAAGTATTGGCTGCTATTTCAGCATTGCAGATTGTATTAACCTGACAAGTTTAATTAGTGTCTTGTGATGTGTTACCATGAACACTAgcttatttgcatatattttgcTCTATTAGGTATGATTCCTGTTTAGACTCAAATATGCAAAACTCATCTCTGACTAATCACTTCAAAATCTGGGCATGGAAAAAAtcacaaagatttttttctgtcaatgTTGATTTTAGCGTAGTCATTAGGGGTCGTTGTACCACATTGTATATACTA
>XM_026920414.2
ATTCCCTTGTTAAAGCAGTTTTAGGGTGTTCTATGTTAGCTAGCGCTATCAGGAAATAGTATTTTGAAGTATAGTGTAAGGGGTGTAAATGTGGTGTAAAACTTGCTTTATCAGTTAAGATTTCGTTTTCTGTCTGACAGAGACATGGCTAAGCAGTATTCCCAGGTAGACATACTACGAGTTGAGTTGTTGCAAAATCTTGAAGATGCTGGGGAAACCGTAACCAGCTACTTCAGTGATGTCGCGAGGCTAGAAGTTGTGTCACGAATAGAAGAGGTTACCAAAAGGATAGTTAGCAGTTTATCGAAGGAAGAAGCACCGGTCTTGGTCTTAAAAAGCCGTTCCCGGTGGTCCAACGTGAGATTTAACAAATCTGTTGGTCTGCTAATGACTACGGGTGGCACTGTATCAACTCTGCGAAGTGACTGCCCTTCAACTGCAATCAAGTTTGCACTGATTTTGAAGGCCCTGTCAACAATTTACAAACTTGTCCAGAGTGATTCATATGTAACCAAAAGGGATATCTATTATAATGACCCCCAGCTATTTGGATCACAGAAGACTTTGGATGCCATTGTTGATGATGTATCATGCCTGCTCAAAGTTCCTCGGAGGAGCCTACATGTGTGTGCCACTACTAAAGGATTAATCTCTGGTGATCTGTGTTACTTGGAGGAGGATGGGACAAGGGTGGACTGTAGTTCCACTGCAGTGCCTGTGTCTTCTAATGTCAATGGGATCATGAATATTGTGTCAGGTGCAAAATTTGTTCTAGTCATTGAAAAAGATGCAACTTTCCAGAGACTTTTGGATGATGAGTTTTGCACTCAATTCTATCCATGTATCATCATAACAGGAAAAGGTATGCCAGATGTCAACAGCAGGCTAATGGTGAAGAAACTATGGGAGACACTGCACATCCCTGTATTTGCCTTGGTGGATGCTGACCCACACGGGATCGAAATCATGTGCATTTATAAGTATGGATCAATTTCAATGGCATTTGAAGCCCCAACTCTGACTGTCTCTTCCATGCTTTGGTTGGGCCTGTTGCCTTCAGACATTGAAAGCCTTGGAGTGCCACAGGATGCTCTAATTCCATTAACAGAGGCAGATGAAAGGAAGCTCAACCATATAAAGAAAAGACCTTACATCTCTTGCCATCCTGCATGGGAGAGGGAGATGGAACTCATGTTGAGATGGAAGCAGAAAGCTGAGATCCAGTCCCTTGTCTCTATTGCTCCTCATTTCCTCACTCGGGTATACCTACACAATAAGTTGTCTTATGGAGGCTGGATATGAGTCTACTCTGTTTTCTGCTGCATATTTACCTGCACTGTAATAATTATCTTTCCCGATTCATTATAGTTGTTACATCCTTTCTGATTACTGAaattatgtaacaaataaatgtttgaatgtttaCCAGATTCCCATAGCTCCATAGGAGGATAACTTTTTGTGGGTCAAGAAAAATGGTAATAGCTCCATATGTGTGTATCTTCAGAAACATTGTTTGATTTGTTCCATGATGTTGAATTACTTTCTCTAATAAAAATGCATGGCCTA

Function

symbol description
spo11 Predicted to enable DNA binding activity. Acts upstream of or within chromosome organization involved in meiotic cell cycle. Predicted to be located in chromosome. Predicted to be active in nuclear chromosome. Orthologous to human SPO11 (SPO11 initiator of meiotic double stranded breaks).

NR:

description
meiotic recombination protein SPO11 isoform X3

GO: NA

KEGG:

id description
K10878 SPO11; meiotic recombination protein SPO11

RNA

RNA id representative length rna type GC content exon number start site end site
TU302907 False 1411 lncRNA 0.50 8 16232013 16309562
TU302921 False 863 lncRNA 0.36 2 16317149 16318306
XM_026920414.2 True 1569 mRNA 0.41 13 16232053 16326614

Neighbor

gene id symbol gene type direction distance location
baz2a baz2a coding upstream 58953 16059312 ~ 16173060 (+)
edem2 edem2,LOC107697010 coding upstream 197175 15976896 ~ 16034838 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding upstream 289010 15895643 ~ 15943003 (+)
LOC113530581 NA coding upstream 691283 15519342 ~ 15540730 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 826366 15399806 ~ 15405647 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 262776 16589390 ~ 16620443 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 468686 16795300 ~ 16823847 (+)
bin2a bin2 coding downstream 503952 16830566 ~ 16846985 (+)
pou6f1 pou6f1 coding downstream 546249 16872863 ~ 16914072 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding downstream 609948 16936562 ~ 16960566 (+)
G255815 NA non-coding upstream 50993 16178137 ~ 16181020 (+)
LOC117599274 NA non-coding upstream 179631 16048562 ~ 16052382 (+)
G255809 NA non-coding upstream 183992 16043155 ~ 16048021 (+)
G255798 NA non-coding upstream 282424 15949213 ~ 15949589 (+)
G255780 NA non-coding upstream 350148 15881386 ~ 15881865 (+)
G256044 NA non-coding downstream 178448 16505062 ~ 16505504 (+)
G256045 NA non-coding downstream 180163 16506777 ~ 16507014 (+)
G256049 NA non-coding downstream 246081 16572695 ~ 16574471 (+)
G256068 NA non-coding downstream 299629 16626243 ~ 16626596 (+)
G256069 NA non-coding downstream 302019 16628633 ~ 16629238 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 2607 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1064345 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 1558061 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 2159797 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 3262004 12956130 ~ 12970009 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 36932 16363546 ~ 16396245 (+)
G256046 NA other downstream 181411 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 744522 17071136 ~ 17124951 (+)
LOC113530386 slc26a9 other downstream 849087 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 2552867 18879481 ~ 18934319 (+)

Expression


Co-expression Network