G256049



Basic Information


Item Value
gene id G256049
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16572695 ~ 16574471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU303063
gtggaaatggGAGTAATTataggagtcccacagtgactggcaCAGCCCCATAATGCTGGGTCCCCAGGCAGATGGGGAGGTCCATTTCTGTGTGGCCTTCCCCAAAGTGAATGTAGATTCTGAATTTGATGACTCTCCAATGCCTCATACTGAAGAACTCCTCGATTGGCTAGGCTCGTCTCATTTTAATTCGACAATGGATTTGACAAAGGACTATTGGTAGATTCCTTTGTCACCCAAGTCCAAGGAAAGCTCCGGTCGGGTTACATGAATTTGTCTCACTAACATGATGGATCAGGCCCCACAATGCACATGCCGCTGGGTACTTAAATGACATAATAGTCTACAGTAATCATGTGTGGCATTATGTGATGGTGGTCCTAAAGTCTTTGAGACTGTCCAGCCTCACAGCAAACCCAGCAAAATGTGCtattggatggatggaggtaTGGCATCTGGGCTTCCATGTGGGTCATAGGCAGGTGCATCCCCAAATTAATAAGTCTGCTGCAATTGCAGCCTGCCCAAGATTCGAGAGATTTAACATGGCACACCTGTGGCCTATTTGTGAGTGTATAGTAGCAAGctatttgtctttctctctgagcTGAGTGCATGTGTGAGGCAGATATCTAAAGCAACTGATATGCAGTCACGTTTCAGCAGCTCAAAGCTTAATTTTTACgttcttctttcttttgctttcttttttgttttttgtacagTGGCACTGCACATGCTCAAAATAAACGCTCATGTGTGCAGTCACCATGAGTTTGCTGGATTCCACAGTAGCATTCCATTGTCATTGCCAAAATGTGACTGTGTTTCAACTGGATTGTCTACAGAACAAAATTATTTCAGTGAGGCATTGTGTCCATGAACTGTAGTGACACAAACTTCATAAGCATCATGGGAGTGTAGTATAGAAACACAGCATGGTGTTCACTGCATATGGTGGTGGCAGGCTTCACCAGCCACTAGGCCACAGCTACAGTCATACCAGTAAAACAAGAGGAACTTTTTTGAAACATTCCCCAGATCAAAGTGCTAACATGACagctaattattttataatattgcCCTGTTTAGTACAAACTACAGTACAATCCAAACTGGCTTTAACAGTGTCATAAAACAGTCATGACACAttgtttcatattcatttatttggatGTGCCACCATACTCATATCCCTTTGAAGATATCTCAAGCAAGTTCTGTACATGTCACTGTTGACAGCTAGAACAGGTCACCAGTGAAGAAGCCATGTTTCACATCAAGGAAACTAACCATAATGTTGACAGATTTACATGCatgattagaaaataaaaagaggtggcatgaaattatatattataatagaCTAATGGTATGAAATAGAAGTTAGAAGGGACCAGTAATGAATAGCCACAGCTGCAGGACAGAAGTTTTTAAGAGTCGTTCACTGACATGTTCTCCACTTTGTTTTGCAAGTCAGTGGCATTGGCTtgctgcttctttttctttcctccctctTGTTGTTTCTTGTGCTTCTTTGAAAACTCTTGGTCAATAGGAGCTGCCTTCACAAACTTGATTATTTCTGTTAAGTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU303063 True 1595 lncRNA 0.42 2 16572695 16574471

Neighbor


gene id symbol gene type direction distance location
baz2a baz2a coding upstream 399635 16059312 ~ 16173060 (+)
edem2 edem2,LOC107697010 coding upstream 537857 15976896 ~ 16034838 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding upstream 629692 15895643 ~ 15943003 (+)
LOC113530581 NA coding upstream 1031965 15519342 ~ 15540730 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 1167048 15399806 ~ 15405647 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 14919 16589390 ~ 16620443 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 220829 16795300 ~ 16823847 (+)
bin2a bin2 coding downstream 256095 16830566 ~ 16846985 (+)
pou6f1 pou6f1 coding downstream 298392 16872863 ~ 16914072 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding downstream 362091 16936562 ~ 16960566 (+)
G256045 NA non-coding upstream 65681 16506777 ~ 16507014 (+)
G256044 NA non-coding upstream 67191 16505062 ~ 16505504 (+)
G255815 NA non-coding upstream 391675 16178137 ~ 16181020 (+)
LOC117599274 NA non-coding upstream 520313 16048562 ~ 16052382 (+)
G255809 NA non-coding upstream 524674 16043155 ~ 16048021 (+)
G256068 NA non-coding downstream 51772 16626243 ~ 16626596 (+)
G256069 NA non-coding downstream 54162 16628633 ~ 16629238 (+)
G256063 LOC108276234 non-coding downstream 64121 16638592 ~ 16643049 (+)
G256077 NA non-coding downstream 87181 16661652 ~ 16729166 (+)
G256076 fam50a,LOC107671832,LOC107715033,LOC107594034 non-coding downstream 109047 16683518 ~ 16694955 (+)
G256046 NA other upstream 64315 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 176450 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 246081 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 343289 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1405027 15117070 ~ 15167668 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 496665 17071136 ~ 17124951 (+)
LOC113530386 slc26a9 other downstream 601230 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 2305010 18879481 ~ 18934319 (+)
pkig NA other downstream 2623955 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2903831 19478302 ~ 19478895 (+)

Expression



Co-expression Network