G256063 (LOC108276234)


Basic Information

Item Value
gene id G256063
gene name LOC108276234
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16638592 ~ 16643049 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303078
AAAATtaccaacattagtactttgttgtAAAGCTGTTGTTGATAAATATAGCTTTGAGATGTCTGTGGTAAGAATTAATTAGGTCTGTGTAGCGATGTGGTTTAAGGGTTGCTTTGATTGGACCATGCTTCCACGATAGAGGGCAGAAAACCTTGGCAGTGTGCAGGTTGTAAATACAGGcaaaaaaattttcatttgtATCAAAAAGCTGCTTTTGGGCTGCTCTGCCCACATAAATATGAGGTAATTTGCAAACTAGTCTAAGGTTTTCATCATTGTTGTATCAACACAAATATGGTGTAAAATAGAATTTAAACCACAAGAAATATACATCGTGCACACAACATTACAAGGTGCAGGTTGGGTAACATAAAAAGCTGTGCAGCACCTGCCTCTGAGGAGgaacatacattttttaagaattattgtgaattaaattttctttaaaatttaaatgcaacCAAATGTAACCATGATtagatttaaattattattttatggaaCCACTTCTTCAATCAGTTGATATTTTGTATTCTGCATCTTTTTACTACTCTCCAAGGAGATTTCTGAAGACCACCTGATTActtgaaaaacttttttttttttttttacattaaataatagTATGTTGTGTGATTTTTATGTGAAGGTATATATTCATACCAagtgatttacattttcataattaatttaataaaaacttaaaaCAGGACACTGAAAGGTATGTTGCGTTGCATTCTATCACCTCAGAAACATAGCCAAGGTCTTGGATGTTCTGCTAATAATGAGAATCTTATACATGCCTTTGTTTCAGCTTGTCTGGATTACTATAACACACTCTTATCTGGTTTACCAAAGAGCTCTATCACTACTTTACAGAAAGGACAAAATGCTGCTGCACCAATCTTGACATGCACTACACTGAGAGATCACCTGTTCTTAAACAGCTGCACTGGCTACCAGTGTTTTTTAGAATTGATTTTAAGATACATTTAGTGATTTACTTTTAGTAATGCATTCATGGCCTTGCTCCAATATAAATTCATTGTTGGGTATGTCCCAGCAAGAGCTCTCAGATTaacaaacagaaatatgttAGTCATACCTGCTAAATCACATTGCAATATCAGTTTCAATTGTAAACGTGGAACTCTCATTGGAAATTAAGATAGTATAATGTTTATCAATATAGAAAAATCATTTAAACCTCAATCTTAACTGTCAGATATAACCAAGGACTCAAATTTGTAAGACTGCAGTTCCATAATAGTGATATTTTCAAGCAATTCCTCCTTGATAAAGACAAGGAACCAGATcaagaaaatgaaatttacTGGTtgctgagtggtgcaacagaaaaagTGTTCACCTTATTGTCTGGAGATCACAAATTCAAATCCTGACCAtgccatccatggctgggagcAAAGATAGAAAATTGGCCATGCATTCAGGGTGGGAGGAATGCCACTCATTCTCACAGCAACACTAGGCATCTGAGAGATCATGCTCTGAATGCATGTTAGTGACAGATGGTACTATCTTAACGGGAACATAGATTTAACTATAGCAGAGAGTAAACAAAGTGTGTGGCATGCCAAACAATGTGTGTatactcactgagcactttattaggaacacctgtacacctactcattcatgcaattatctaattagacaatcatgtggcagcagtgcaatgaataaaatcatgcagctatgggccagcagctttgagtaatgttcacatcaaccatcagaatagggaaaaaacgTGATTTTGACCgctggcatgattgttggtgccagatgggctggtctgagtatttctataactgctgatctcctgggattttcatgcacaacagtctctagagtttcctCTGAatagtgcaataaagaaaaaacatccagtgagcggcagtacTGCGGACAGAaccaccttgttgatgagaaaggtcaacggagaatggccagaatggttcgagctgacagaaaggctactgtaactcagataaccactctctACAattgtagtgagcagaaaagcatctcagaatgcacatgttGAACAGTAGAAGACCACGTCAGATTTCAGTTCTGTCAGCcgagaacagaaagctgaggctgcaatgggcacaagctcaccaaaactggacagctgagaCTGGAAAAACGAAGcctgatctgatctgatgaatctcgatttctgctgaggtaCACAGATGTCCAGTcgaggctggtggaggtggtgtaatggtgtggggaacgTTTTTTGAATCAATCATctcttgaatgccacagcctatttgagtattgttttTGACCATGTGCATCTCTTCATGACCACAATTTTACCCATCTTCCCACccaatggctacttccagcatgataatgcaccacgTCACAAAGCAAAATTCGTTTAATACTGGTTTCATGAGCATGACATGATGAGTTCAGTGTTCCCAGTCACTCGATCTGAATTCAACAGAACTCCTtagggatgtggtagaacgggaaaTTCTCAgtatgaaagtgcacctgagaAATTGGCAGGGATTGCGTTATGCAATCatttcaacatggaccagaatctcaaagaaatgttGGTGTGGAATGTGGAATCCAttccacaaagaattgaggctgttttgagagcaaagtgtGGCTCTATCCAGTATAGTGTTCCTTATAAAGTgctcggtgagtgtatatatgcatTTGGCTGTATTGGTCGAATTATGCAAGGTTGCAACAGCTTTTGAACATGTATGTTAATATGAGCAGTGTgaatttaaatcatattcagAACACACCAAGTCCTATGGAATGATTTACTGAAATACaatgtgaaatgtaaattaACCATATAGATTTGAAACCCTacgaaaaggagaaaaaaaagcaagaaaaagatCAAAGGAGCACCTGAACTTCTTGGTTTAATCAACTAATTGACTGAGTGAGTAAAGGCCATGACCATGGTAAAGTTCTCAGTCAAATGCTTTACTTACAGTTAGAATAAACTTGCAAGTGAAAAACATGTCCTGCATATAGTGGAATTTATCCTGCACTACACTGACGTTTCTGTGTGGCCTATCTTGAGATTAGATGAGACAATGAAAGGTCAGGGTTCCCTTTTTAAAGACCTGAATCAGATTACCGGATTAACAGTGTACTGTTCAGTGTCAGAATGGAGCCCCCAATCTGTGGATATCTGAGTTATTTACATGGGCCTCACATTTCGTTGTGTCCAACAAATTcacaaaatgacacaaacatgaaaataacaaTATGTTGTACATTTACATGTGAGATGTAGCAGCAGCCCTTGTGCTTGTGTGAAAACAGCACCCCCTAGATTGTCTGTGACAAGACAATCAATATTACTTTGATACAATGATGGGAGCAGCAGCTAACTTAAGAGAAGCCTCAGGTATTAATCTCTATAACCGTCTATAACCATCATCTGTCTGGCATACCCACAGTTTGTCAAACATGAAGTGTCTCTCTCAGCAGTACTGTCTTGGCAATATTTATTCCTTTTCTGGTTGATTTGAATGGAAAAACCTACAAGCTGAGCAGGGTAGATTTGGGTCTTGCTTCCCCTTATATCAAGTTATTTTGTTCTGCCCAGATCTTCTTTAACTCTCATGCCAGATGGTTACAAACCACCAATCAGTATCCTTGCATCTTGAATAGCTAGTAGTAATGCTGCACCAGCTGGGAGCTTAGAGTAGCCATTCTCTGAGATGTTTTCTATCAGTAGGTAAGCTCCAGGCTTCTGCAAAGCCACTCCATGGAGATGGGAGAAGAGCAGTGGCAAGTCCTTTGGAAGAGTATAATGAGAGGCCAAACTTAACATGGTGGGGATGTCTGACTTCCTTGAATACTCAAAAATGGCAGTCATGTATTTGGAGAGGTCCTGACCCAGAGATTTGGCACGGAATATCTCTTCTCCAATCATGGCTATAATGGCTAGTGAGGTATTTGCCCTTTGGTCCACTTCTTCTCTCTGGTTATGCAGTCTCTGGTTGAGACCCTTGGAGCAGATGACAAGCACAAAGTCGCTCTCCTTTATCTTTCTGCAATACCACCCCAAATCTCCCTCCTCTGTCATACTTAAGGCATCCCACAGATCCAAATGTACCTGATGGGTAATTTATCATCATCACACTATCATGAAAACATATACATAAACACTGATCACATATTCTGCTACTTATTAATGTTTCAAATGTTATAAGATACTTTAACTGCTTTAACACTGTTTTTACCTCAGTAGCCATATGCTTTTGCACAAACGTTGCCAATTGTAAGACAACCCTCACATGGGCAGAACCATCACTGCTTGAGTAGCAAATCAGGAGTCGAGGGGGATTGGTCCTGTTGGCTACTGGTACAAACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303078 True 4410 lncRNA 0.39 2 16638592 16643049

Neighbor

gene id symbol gene type direction distance location
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding upstream 18149 16589390 ~ 16620443 (+)
baz2a baz2a coding upstream 465532 16059312 ~ 16173060 (+)
edem2 edem2,LOC107697010 coding upstream 603754 15976896 ~ 16034838 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding upstream 695589 15895643 ~ 15943003 (+)
LOC113530581 NA coding upstream 1097862 15519342 ~ 15540730 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 152251 16795300 ~ 16823847 (+)
bin2a bin2 coding downstream 187517 16830566 ~ 16846985 (+)
pou6f1 pou6f1 coding downstream 229814 16872863 ~ 16914072 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding downstream 293513 16936562 ~ 16960566 (+)
csrnp2 csrnp2 coding downstream 362016 17005065 ~ 17034276 (+)
G256069 NA non-coding upstream 9354 16628633 ~ 16629238 (+)
G256068 NA non-coding upstream 11996 16626243 ~ 16626596 (+)
G256049 NA non-coding upstream 64121 16572695 ~ 16574471 (+)
G256045 NA non-coding upstream 131578 16506777 ~ 16507014 (+)
G256044 NA non-coding upstream 133088 16505062 ~ 16505504 (+)
G256077 NA non-coding downstream 18603 16661652 ~ 16729166 (+)
G256076 fam50a,LOC107671832,LOC107715033,LOC107594034 non-coding downstream 40469 16683518 ~ 16694955 (+)
G256097 NA non-coding downstream 113483 16756532 ~ 16762546 (+)
G256114 NA non-coding downstream 204105 16847154 ~ 16851180 (+)
G256119 NA non-coding downstream 233753 16876802 ~ 16877036 (+)
G256046 NA other upstream 130212 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 242347 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 311978 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 409186 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1470924 15117070 ~ 15167668 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 428087 17071136 ~ 17124951 (+)
LOC113530386 slc26a9 other downstream 532652 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 2236432 18879481 ~ 18934319 (+)
pkig NA other downstream 2555377 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2835253 19478302 ~ 19478895 (+)

Expression


Co-expression Network