G256077


Basic Information

Item Value
gene id G256077
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16661652 ~ 16729166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303097
ACGCAAAaccaaagctaatgctaaggcttgcccacgggagcaccactcctctccgcttcacgtgtttaacaggtttgctctcctcagtgaagcacccgctgagaaaccagATCAATGGTGCTGGCAGACTGAGTAGCTGCACCGAGTCGTCACTCGGGTTCCAAcatactgagactgtgtctgttccaccagctaaaaaaaatgtacaaataatcagaaagtttgttttagtaaagAGCTCTGGTCATAGGAGACTCTATTTTAAGGCACGTGAAATTatctaggcctttaggggcaccagccgCTTTACTTAGGTGTATACCGCTAGCCAGGGTGCCAGACACAGCAgataatcttagggtcttaggcaagcacgggttctcaaagatagttattcttGTATAagctaatgatatacaccttcgtcagtcagaggttactaagagtaacattgtagaggtgtgtaaataagcgaaggcgatgtccaaTGCTGTAGTACGccctggccccatcccaatgcggcgtgctgatgtagcttacagcaggttatggtcgttgaactgctggatgtgcaggtggtgctccaaaaacaaacatgggCTTTAGAGATTATtagagtagttttgagggcaaggctggcctgctagggcgggacggtatccatcccacatagtctcagaacaggcctagttaatctgTGTCAATCCAGGGAGTAGACCGGGTAGCTACACTGAGTCGTCACTCGGGTTCCAAcatactgagactgtgtctgttccgccagctaaaaaaatgtacaaataatcagaaagtttgttttaataacctaattaacataaaattaaatcatatcgaatgcacagccagcaccatTAATCTGAAGCTGTTAAATATTGGCTCTCTTATttctaaagtgcttattgttaatgaaactattactgatcaggagtttaatgtactgtgtttaacagaaacacggattaaaccaaatgagtatgtagcattaaatgaagctagtccacCCAGATACAGTCATATACGTCAGCACCggctaactggcagaggaggaggtgtcgcagttatttataatgataatctatgTGTCGCACataaacctagtcataaattcaatgaGTGTGAAGTTCTTTATACGAACATAAGTAGCCACAAAAAACAAGacgattccactaattattatttacagaccccatgcagggccatattctgaatgcctttgtgaatttgcaaaTTTCAATTCAAGGTCTTAGTCATAATATAAGCACCTTGCCACGCTACTGTGTCAAACGTACGTTGACGTAagctactgcacagagttttatcaataatctcccacAGTTATCAACTAATGATTGGATTACCGTCTGACCCCAgagaacttgatcaggcaactgaataCTTAGAGTCAAAGTTCTGCTAAACTCTAGATAATgcagctccacttaaaagaaaaataattagagagaaaaaaaccagCACCTtggtataatgatcacacatgcaccttacaacagaccactcaaaaatTAGACCATAAATGGAggcaaactaaattggtagtatttcaaacagcttGGAAGGAGAGGCTCCAGAGCTATAGAAAgtctcttagtgctgctagatcaacaTATCTCTCCATCCTaatagaaaataacagaaataatcctagattcttattttatactgtaacaaaattaaataggAATAAGACTaccacagaaacatgcacaccataTGTATCAGCAATgacttcatgatttttttttttccaatggcaaaattgaaaatatcaggcaaaaaattcagactataaatttaaaaccagaaaaATTCATAACTAactctgtaaataataatataaccatATAAGATCAGAATGTtagattagaatgttttacttcCCTTccagagactgaactaatttcactaatttcctcatcaaaatcatcgacttgtatactagatcccttacagAAGCCTCACTGGCTGAGGAAGCAAACAAACCTCttctaataaataatcaattcccttcccttagcactggctatgtacctaaatcttttaaactagcagtcaTCAaccccttgattaaaaaacctgacctcgacCCCTGTCAGTTATCCAACTATAAGGCTAATATCAAaccagcagttatgctcatacctacatacgagtaacattcatgaaatgtatcaggtaggatttaggcctcatcatagcacagagacggTGCTGgataaagtggtaaatgactggTAAACTACTACTGGCCTCCGATCACGGTTGTGTCTCcgtgcttgtgttgcttgaccttagtgcagcttttgataccattgatcatactattctcctcgatagactagaaaatgctGTTGGcgttaagggaatggccctctcctggctcaggtcttatttgacagATCTATATCAGtctgtagatgtaaatggtgacttctggtcttttatgatctgccacacctacttcgatcaaaaggagcaagctatttgttggtacctcaaatagtgaagaCTACaacagggggcagagctttcccTTACAAGGCCCCACAGTTATGTAACAGACTTCCATTTAGTCTTTAGGACTctgacacagtctcagtgtttaagtctaggctgaaaagaTATTAGTTTAGTCAAGCAtttgcaaatatatttttttttccttaggtaaaggagcagatctagaGGGTTCACGGGCATACAGAGTtgtggtaaactgggatgtttaggactgcaattgccatgaacagttttgcacagCAGTCTCCagcagtgaacagttgataaccaacaaaatagacttcatgtgaaaactataatgaatgtcttggttacacaattgcactttttgaccatgcaATACACAGTTagagaagagatttatttacaatttcactatctgttgtcaccgagatgaggataggttcccttttgagtctggttcctctcaagatttcttcctcatattttttcagggagtttttccttgccaccgtcacctctggattgctcattagggatatatttataaatttaaaatttacagaaatatataaattcaaattttaaatttataaattgtcACCCAGATGTCCAGATGTCAAATGAGATGACGATGTCCACTGtcaaaagcactatacaaataaaactgaattgaattgaagacaGCACTTGTAACAACAGACTGGTAGATAATCTCCAACCTTCCAGGGCCTTAGCTTCCTCAGAAAATAGAGTCTTGCTCATCCCCTTCCTGTACACAGTCTCTGTTTTTATCTTCCAGACCAGCCTGTTGTCAAGGTGGACACCAAGTTGTCACTCTGGTTGTGGTTCTTTCCCTCATgaccatctccttggtcttggCCACATTGAGGAGTAGATGGTTCCTCCCACAAGACTCAACAAAGTTCTGTAAGTCCTATATGGACCACCAGGTCTCTATATTCCTCTTTCCTTTCCATCCCTGATGCACCTGACCACCAGTGTCATTGGAGAATTTCTGGAGGTTGAAGGTCAGTGGGGCACAGGAGGATGAGGAATGGGGAAGGCACAGTTCCCTGTGATGCTCCAGTGCTGCTCAGTAGATGCTTGGACAGGCAGCCCCCCAGCCACACAAACTCAGATCTGTGACAGATAGTCTGTAACCCAGGAGATCATGGAGGTGCTGACCTGCATAACCATCTTCTCCCTTAATCGGAGGGATTAATAGTGTTGAAAGCACTTAAGAAATCAAAGAACACAATCCTTAACTCAAACCAGTCTATATGGCTTTCGCAATGGTGGTTCCCAAGACGGAAAAGCAGGGAACCAGAGGTGAATAAAATGTGTGTCTCGATCCACCCTGATCCCCTGTGGAGATCACTCCTCTCCATCCCAAACCACAGAGGTTGCCAAGTTGCATGCGGAGATTTCCGATGTGTTTTTGCCTATACCCAGTCACACTAATCTCACTAAACACTACATTGACATGCCCCCAGGTGTGGTGGTATGAAGCCACCCCTACCATTTGCttcaacacaaaaaaacaggtgGTTTGGGAGGAGGTAATCAAGGAGCCCCACAGTGACTGCTCCAGTCGTGTGGTTCCTGGTTTCCAAGGCCAATGTGTTGGTCCGGTTATGTGGGGACTTTACAAAAGTCAACACAGTGACTAAATCCAATGATACCCATTGATGAATTGATCAATTGGTTAGGTGCAGCTCGCTTTTAGTAAACACTGGATTTGACTAAGGGATCACATTCACTCCAATAGCCTGTGAGAAAACAGTTTTCCACTccatttgggttacaccaatttgtcaccctCCCTTTTGAGTTGTTCAGAGCCCCAGCCACATTTCAACAATTCATGGACAGAATCCTTTGTCCACACACTGCCTTTGCCACAACCTATTTAGATGATATTATTAGTTATAGTAATGACTGCCGGTGGCACCTTCAACATCTGAAGGCTGTCCTAAGATCCTTGAGACAGGCaggactcacagcaaacccaaaaaagtttgcaaaaagaccaaaaaggagCTGAGAgtttctggggctggctggctattatcataggtttgtatttaattatttggagGTCACCAGCCCTCTGAAtgatctcactaaaaagggagcaCCAGATACAACCAGTGGACGGAGCCGTGCCAAGGGGCCTTTACTCAGGTAAAAGCTACACTTTATGGCGGGCCACTCTTTCATTCTACTGACTTTTCTCTCCCCTTTGTTTTACAGACAGACGTGTCAGACAGGGGGCTGGGGGCTGTGTTTTCCCCAGTGGTGCAGTGTTCAGTGCTGTATATCAGCTGCAAGCTCTCAGTAAGGTAAAACAAGTACAGCACAATCTGGTGGGATGGGACTTCACCCTCTGTTCAGACCCCTAAGCACTCCagactcctgtgtgtgtttgtgtatctctgtgtgacACTGCGAATTACAAAACGCTGAAAAGCATgagcaaaaagaaagaaggaaaataaagaacCCTTAAGCTGGTCCAAGCCTGCACTCTATTTCCCCATTTTCCTCACAACCCATGAAAGTGTCACATTTCCAAAGAAGCTTCTACAAAGTACTGAagaaagggtctgaatactcaCACAAATGAAAGATTTCAGTATTTGATTTgcaaaaaaagtctaaaaatgcttttcactttgtcattatgggtcATCGTGCACAGATTGATAGccaaaaaaagttcatttaatacattttaaactaaatatataaacacaaaaattatGGGAAAAAAAGTGAAGGGTATTGAATACTTTGTGAACCAACTGACATGACGCCATcctgtatattaaaaatatgtattgcTAACTGATTCAAATAGCTCTGTTACTCACTGCCCTACACTGCATCATGCACATTCTTCATGACATGAGTTTTGAAATAAGAAACTAATCATTCATTTGAGACCATGTTCATTTTTAACTCATCAAGCTGACATACCACCTACAAACATTTTGGCTACTGATGGTGGACCAAAAcgtcagtgtgccaaatttgccGAATACAAGTACAAGACCTGGTGCTAATACTGCAAACACATCTGATATGACCCTTCTGTGTCAGGCTctaaaactaaaagaaaacactaagcatctctctctctctctctctcacacacacacacacacacacaatgagacTTAGGTCTCAACTCAGGTTatagaatggagaattcaaaaACTTGTCTAACACGACAGAGAGCTACATGACTGACAGCACAACTAATTAACACCAGAATAAGAAAAGCCCGGTACTTCAGACGCCCCGAGAGTCACACAAGTGAATGCCtagccatttttaattttattatattctaatTCTGACCAAAAATGTATGTTatcaaatttgaattttgtgtatcgttacacccctagtaaAAGATATTTTTCGAGTTTGGCTAGTGtcttcattttctgtaaatgtttaactgCAGGGTGACTCCATGCAGTAAGCCCACATCTACCATAGTTACATCTTTTAATCCTCCAGGTGCACCAAATATATACAGATGAGTACCATCAACAATTCTGCTCTTATAGCAGCTGTGTGCACATGTAAACATAGCACACATCTAAATATATAATGCTGGCCTAATCTTCAACAATACGAGCAAAAATGCTTGTAACCTGTGGATGGTGAGATAGAGTCTCATGAGCTCAGTAAACTGGGGATCACTGTAGCCCAACATGTTGGTGAAATTGTGAGACCAATCCAGGTTGGGATCGATGGCTCCAATGCTGCTGCCCTCACGGTACAGGTTGCGGTAGATCTTAGCCGCCACACAGGGAAGCTTGGCAATCAAGTCCATGGAGTCCTCAAACACAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303097 True 6387 lncRNA 0.41 3 16661652 16729166

Neighbor

gene id symbol gene type direction distance location
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding upstream 41209 16589390 ~ 16620443 (+)
baz2a baz2a coding upstream 488592 16059312 ~ 16173060 (+)
edem2 edem2,LOC107697010 coding upstream 626814 15976896 ~ 16034838 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding upstream 718649 15895643 ~ 15943003 (+)
LOC113530581 NA coding upstream 1120922 15519342 ~ 15540730 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 66134 16795300 ~ 16823847 (+)
bin2a bin2 coding downstream 101400 16830566 ~ 16846985 (+)
pou6f1 pou6f1 coding downstream 143697 16872863 ~ 16914072 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding downstream 207396 16936562 ~ 16960566 (+)
csrnp2 csrnp2 coding downstream 275899 17005065 ~ 17034276 (+)
G256063 LOC108276234 non-coding upstream 18603 16638592 ~ 16643049 (+)
G256069 NA non-coding upstream 32414 16628633 ~ 16629238 (+)
G256068 NA non-coding upstream 35056 16626243 ~ 16626596 (+)
G256049 NA non-coding upstream 87181 16572695 ~ 16574471 (+)
G256045 NA non-coding upstream 154638 16506777 ~ 16507014 (+)
G256097 NA non-coding downstream 27366 16756532 ~ 16762546 (+)
G256114 NA non-coding downstream 117988 16847154 ~ 16851180 (+)
G256119 NA non-coding downstream 147636 16876802 ~ 16877036 (+)
G256239 NA non-coding downstream 193745 16922911 ~ 16923403 (+)
LOC113530783 NA non-coding downstream 318911 17048077 ~ 17050931 (+)
G256046 NA other upstream 153272 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 265407 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 335038 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 432246 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1493984 15117070 ~ 15167668 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 341970 17071136 ~ 17124951 (+)
LOC113530386 slc26a9 other downstream 446535 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 2150315 18879481 ~ 18934319 (+)
pkig NA other downstream 2469260 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2749136 19478302 ~ 19478895 (+)

Expression


Co-expression Network