G256114


Basic Information

Item Value
gene id G256114
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16847154 ~ 16851180 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303142
TGTGACTGAAGCTGGAGCTCCATTGTTCCGGATACAGAGCGAATGTTCACCTCTACTAGCATGCGTACCTCGTGCACTAGTCTATTTTCACTGTATCTACTTTTACATGTGTTGCTTCgttaaatgttgtttttaaaacGTCATGGaagtctgaaataaaataagtaacCGATCAGTGTGAACAAATGCCTCTAGACGACAACAAACTCTGTCAGGTTTAGGTGTTCGCGCTTTTCATCATGGCTACCACATCACCTTTTAACCTCACAGAAATGGTGCCAACAAATGTGGCCCCAAACCATAGAGATTCTACTGTGGTAGGAGtgGTGATTGTGCTGGTCTTGTGTACACTGGCTGGCTTGGCGTACCTGTTGTATCGCTACCTGTGTCACAACAAGGGCATCTACAGGACAACAGGAGAGGCTGGGCCAGGTGTGGACCCAGACCAAGGCTACCATGACACAGTCACTGAAAACAAGGAGTACTTCATTTAAAGTAATCCAGACTGCCATGGATGAGTTGGCAGTGAAGGTCATGTTGAATAGGTATTGACATTTAGATTTTTTGCTGAGAAGAGTGATGTGCTGTAGGAGCACAGCCACTGTGGAGACTGTGCGCTAACTAAGGTAATGATTAAGTTTGTGCTTTGGTGTTTTGGGGTTTTATTAATCTAATGATGCATATTGATGTATAAGAAGCAGGGTGAGTgggtcatatagtgtatcaaaCCTTGTTTCTCTGTGCAACAGATTTACATATGTACCTGACACCTTCTTTTGGTGGTGAGATGCAATGGAACTGCCACCTCTGTTAAATACACAAGTTAGTTGAATGACCATAACATGTTTGACCTACGAGCAATAATCCCGTTAATACACAATAATCCCGTTCTCAAATATGTTTCTGTTCACAAGGCGGGTGATGTTTGTTTATAAATGCTGGCATACCTGCTTTTCTTCTGTGGCTGACTCTACTTTCACACTAGCAAATGACTTGTGTTACTTGTAGTTTTTCTCTTGTGGGTGTATACTGACTGTTTAAATCccaactaattgcaggtaggaactaaagtttgAAGTGGGGAACTGAAGCAATGTCGGACTATGGAGGCATAGGACTGGTCTGAGCAatcaatcgtttggatttgttacTTTACCGTGCCATAACTAAtctgcatagaattgagaaaatttaaattcaaattgtTACTTCCCACTGTGGATGAAATCACAGCTGTGTCTGCATATAGAAAATTACCTGTGCCTGCTGCTTTctcacactatatatatatatatgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatataattaatataaaatccTACACAGGGAGAGCCAGGAGCCTATCCCcagggactcggggcacaaggcagggcacaccctgaatggggtgccaacccatcgcagggcataattatgcgcacacacacacaccccaatcACACATTGTGAtacctgtggaggttgttggtgatgtcgcTGACTgctgttttggggtttttcttcacaactCCCATAATGTTTGTGTCATTGACTGatgctgttttccttggctgacctgttcgatgtctggttgttagtacaccagtggtttttttttttttttcccctctccagGACACTCCATAATGTTGTACTGGCTATGTCCAATGCTTGTGCTGTGGCTGTGATcgattttcccttttttctctgggcccaaaccaagagtagacattcagagctattaattgtttaaacaatcaatctaacagggcacaccagGACAcaaagaaacacctgtcagtcacatgttcacacatttttgatcatttgaaaaaaaaagggtgggttcaaacaaaaggtgcttAACACATCTATATCtacacatatacatttatataatatcaggaaatgaaagctgaaatcctgatctatcatatcatattcatcttttgatctcaaacccaaatgtcttcagtgtacagcaaaagaattggccttgccgttccagcAATTTCAAAGGggactgtgtgtgagagcaaACTGAGTATGAGAGCAAACATCCAGCCAAATAAAGTACATTGAGTACAACACAGTGGTGCTTATAACCACGTGTCACAACACACAACCAGACATACAAGGAATGGCAGCTTATGAGGTTTACCTAGGGTTAGGTGTGGCTACTGCATGTTCAACACAGGCTGCAAATATGAAGCTAGAATTAGaacatagaaaaatattaagttGTGCATCTTTTGCTTCATGTGCTCGGTTATGTTGTCGCCTAACCAAATCCAGCAACTATTATTACCACCAATACGCTAGATACTTActgattaaaagaaaacacaaaaaagggtATTTTGAGAAACCTTTTATTCTTTGCATGCTTAGGCTATCCCCttattttaaatgctgtttattaaaaatatttttaatcattatcatgtgAATAATCATTCACATGTCCAGCTTATATGACAACACTGTGCATtgagtatatttttattttcctttgtttGTAAATCACAAGCATTGGTGCTTAATGTCAATTTTTAGTTTTTCTGCAATCCCACTGTTAACTAATTCTGTAACTAATTTGAATTCTGTAACTAATATGATCAGATTAAAAGTTAAGTTCATGCTTTGTAATT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU303142 True 2696 lncRNA 0.39 4 16847154 16851180

Neighbor

gene id symbol gene type direction distance location
bin2a bin2 coding upstream 169 16830566 ~ 16846985 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding upstream 23307 16795300 ~ 16823847 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding upstream 226711 16589390 ~ 16620443 (+)
baz2a baz2a coding upstream 674094 16059312 ~ 16173060 (+)
edem2 edem2,LOC107697010 coding upstream 812316 15976896 ~ 16034838 (+)
pou6f1 pou6f1 coding downstream 21683 16872863 ~ 16914072 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding downstream 85382 16936562 ~ 16960566 (+)
csrnp2 csrnp2 coding downstream 153885 17005065 ~ 17034276 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding downstream 321012 17172192 ~ 17175513 (+)
hrct1 LOC108276455 coding downstream 338699 17189879 ~ 17194246 (+)
G256097 NA non-coding upstream 84608 16756532 ~ 16762546 (+)
G256077 NA non-coding upstream 117988 16661652 ~ 16729166 (+)
G256076 fam50a,LOC107671832,LOC107715033,LOC107594034 non-coding upstream 152199 16683518 ~ 16694955 (+)
G256063 LOC108276234 non-coding upstream 204105 16638592 ~ 16643049 (+)
G256069 NA non-coding upstream 217916 16628633 ~ 16629238 (+)
G256119 NA non-coding downstream 25622 16876802 ~ 16877036 (+)
G256239 NA non-coding downstream 71731 16922911 ~ 16923403 (+)
LOC113530783 NA non-coding downstream 196897 17048077 ~ 17050931 (+)
G256319 NA non-coding downstream 203686 17054866 ~ 17055091 (+)
G256322 NA non-coding downstream 207012 17058192 ~ 17058497 (+)
G256046 NA other upstream 338774 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 450909 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 520540 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 617748 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1679486 15117070 ~ 15167668 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 219956 17071136 ~ 17124951 (+)
LOC113530386 slc26a9 other downstream 324521 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 2028301 18879481 ~ 18934319 (+)
pkig NA other downstream 2347246 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2627122 19478302 ~ 19478895 (+)

Expression


Co-expression Network