G256162


Basic Information

Item Value
gene id G256162
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16636888 ~ 16637725 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303191
AAAACTGTACAATGTTGAGacataattataaatgcatGATCTATGATGATAGAAGGTGCCCATGTCATGGAAaccaataacattttcattttttgagtTAAAGGTTGATGTAGCATGTAAACATTGTCAAAGTTTTTTTCATCCCCAATCCGTACAGTCTAAGCTCAGCTGCAAAAACATCCCTTCATAGTTGTGACTCACATTTACATATCCCAGCTAATCAGTCCACAGCAGTTAAGACCCACCCATTTATGTTGATAAGGAATGTTTCGTCCTAGACtattttttatgtaataatatgcCAATCAGAACACAAGTCATTTAACATATTGTATATCGGTCTTAGAGACATagtttaaaacaattaattaattaataaacaaacaaacatacatacatacatacatacatacatacataaataacagCCTGTGATTTCTAAGATATAAAGAGAAACTGGAAAATGGTCATGTGAAAATCAGTTATAATTGTGAAAGttaattatagcattttaattGATGTTaaggaaaatgtacagtatgggCAGTTTAAACATCCTAAAAAAATATCCTAATCAGCTAACTAGAAATACACtcactttattcactttattagaaacacccatacacctgctcatttatactactatccaatcagccaatcatgtgttaGCAGTGCAATGCCTTAAATCATTCAGAAACAGGTCAAGaggttcagttaatgttcacatcaaacatcagattggTGAAAAATATGATTGTATAAGGCACTTAGTTTGGTtaggttggtttgagtatttcagaaacttctgagATAGGGGTCCACTGGTTCTACTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303191 True 838 lncRNA 0.32 1 16636888 16637725

Neighbor

gene id symbol gene type direction distance location
sars1 sars,LOC107697960,LOC107671868 coding downstream 49140 16574026 ~ 16587748 (-)
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding downstream 984283 15608285 ~ 15652605 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding downstream 1075774 15455518 ~ 15561114 (-)
LOC113530990 NA coding downstream 1149029 15487757 ~ 15487859 (-)
lmod3 lmod3 coding downstream 1185538 15412170 ~ 15451350 (-)
si:ch211-207e14.4 LOC108276234 coding upstream 3735 16641460 ~ 16647701 (-)
cs cs,LOC107707042,LOC107671863,LOC107697968 coding upstream 70465 16708190 ~ 16762693 (-)
rapgef3 LOC108275659,LOC108425525 coding upstream 487294 17125019 ~ 17171019 (-)
LOC113530577 NA coding upstream 571160 17208885 ~ 17226734 (-)
LOC113530575 NA coding upstream 1092987 17730712 ~ 17735744 (-)
G256160 NA non-coding downstream 4440 16631392 ~ 16632448 (-)
G256166 NA non-coding downstream 7371 16628981 ~ 16629517 (-)
G256164 NA non-coding downstream 10271 16626242 ~ 16626617 (-)
G256163 NA non-coding downstream 12116 16624466 ~ 16624772 (-)
LOC113530939 NA non-coding downstream 71415 16560724 ~ 16565473 (-)
LOC113530431 NA non-coding upstream 143403 16781128 ~ 16782877 (-)
G256197 NA non-coding upstream 155192 16792917 ~ 16793280 (-)
G256199 NA non-coding upstream 156719 16794444 ~ 16794769 (-)
G256212 NA non-coding upstream 191490 16829215 ~ 16829435 (-)
G256208 NA non-coding upstream 214008 16851733 ~ 16852672 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 816647 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 1319523 15258485 ~ 15317365 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 1932618 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 2486307 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 3353003 13251140 ~ 13283885 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 10098 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 150076 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 215203 16852928 ~ 16871164 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 1246518 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 1647761 18285486 ~ 18300687 (-)

Expression


Co-expression Network