G256403



Basic Information


Item Value
gene id G256403
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17191099 ~ 17193072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU303456
CTGTTTGGATATAATCAACCCAGGGCCATTCATTTGTTCCACTTTCCTCTCTGGATTTATGCCCACAATCCTGGACTGGCTACTGCTCTGTCTTTTTCGAGGCTGTTGTACTATTGCAGGCAAGGCCAGAATAAGCTTCTTGGGGTCAACTTGGTCCTGCCAATATTTGACTGTGTTGTCCTGTGAGGGAAGAGAGTGTTGTATAAATAACCGATCacattaaatatcaaatatgttataaatatatgctgacataaaattaatcatttatttaaatccaaAACTATATTTTTACTGAAGGAGTTTTCAAATGAAATCATCTGAAGAACTTACAATTTGTACATTATTAGGACTCAGTGGCAGTACGCAGATGAAGTCAACATACctttacaataaaacatttatagaaagaaagaaagaaagaaagaaagattatgTATTATGCATATAAAGTACATCTGACTGAAAACCTTTGGTTTACTTTTAAGGCCAGTAAACAGTCAAAAAATGACAAGTCCTCAGTTGAGTAATTCTAACTTATATCAGAAACCAACATCTAAACAGCTGCATGAGGacttaaaacaataaaagtttAGGATGTACTGTGGCATCTTTTCAGAATGTATTGCACTCACTGTGACAAAGTTTTCTTGTCAATATTAGTACTGATGTGGTTACTATGGTCCAGAAGAGACACAGAAACAAGCAATGACTTGTTAGCAGCTTGGTCAATCCATCGTCTTAGTTCCTGCATGAAACAATTTAATACattatggccaaaggtttgtggacacctgaccatcacactcatatgtgggccttccccaaactgttgctacaaagttggaagcatacgattgtataggatgtctttgtatgctgttgcATTACACTTTGctttcattggaactaagaggcctagcACAGACTTGTCCTAGCATGATAATtttcccctgtgcacaaagagaggtccatgaagacatggtttgccaaggttggagtggaaaaactcaagtgacctgcacaaagccctgacctcaaccccactaaacacctttgggatgaactggaatgcagacGGCACCCCAGACCttcttgcctgacatcagtgcctgacctcactaatgatcttgtggctgaatgagcacaaatccccatggTCACCTTCCAAAATCTAGCGGAAATCCTTTCCAGAAGAGGagactaaatctagaatgggatgttcaaaaagtgcATATGGATGTGATCAGGTTTCCATAAACtgttggccatataatgtatttataaaagtataatgTTCAGAAATATAGTTGTTTTAGAATTTACAAGTGAGAACCTTGTATGCTTTACAACTCATATGATATAACAGCATCCAAAAATATCGTTTATTACCTTGATGAAACTTGTGAGGGTTTCTGTGTTGCTGAGAGTTTCATCAGTGTCGTTCTCCAACCATGTCAACTCCACTCCATCATAATTGTTCTTCTTCACATATTTCAATGTTGAGTTAATAAAGTTATCCAGAGTTATCTGCTGCTGGGACAACACCTCTAACCTACACACAAGCAATTGCTACCATGTAAAGAATTTTTCAGAATGTAATAAGAAAGCAATTTCATTAACTGAATACCTTGTCTGCTTCACCCCAACACCAAGCAACATCTTTAGAGCTGGATTCCTGAGTAAAGATGTGTAGTATTCAATTTATTatgatttcaaaaaaaaataataataattaaaaaataattaaaaatagccTGCCTATTTCACTGTACTGACCTGTCTTTCAGCATTTTCAGCATGGAGCTGAAAGGGTCCACATCCAGTGACAAGGTTTTTAAACTTAAGTCATCACCAATATAAGCAGTGGAGTATATAATATGAGTGCACAAGAAAGgatcaacagtgaaaaacatGTGCTGCATGGGTGCATCCATATAACAGGCCACTGTGGAGTCACTCTGAGCAGCAGAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU303456 True 1974 lncRNA 0.38 1 17191099 17193072

Neighbor


gene id symbol gene type direction distance location
rapgef3 LOC108275659,LOC108425525 coding downstream 20080 17125019 ~ 17171019 (-)
cs cs,LOC107707042,LOC107671863,LOC107697968 coding downstream 428406 16708190 ~ 16762693 (-)
si:ch211-207e14.4 LOC108276234 coding downstream 543398 16641460 ~ 16647701 (-)
sars1 sars,LOC107697960,LOC107671868 coding downstream 603351 16574026 ~ 16587748 (-)
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding downstream 1538494 15608285 ~ 15652605 (-)
LOC113530577 NA coding upstream 15813 17208885 ~ 17226734 (-)
LOC113530575 NA coding upstream 537640 17730712 ~ 17735744 (-)
taf8 taf8,LOC107594013,LOC107671856,LOC107723763,LOC107549030 coding upstream 554210 17747282 ~ 17754344 (-)
g0s2 g0s2 coding upstream 562520 17755592 ~ 17756555 (-)
camk1gb camk1g,LOC108425536,LOC107590467 coding upstream 573137 17766209 ~ 17778850 (-)
G256393 NA non-coding downstream 13869 17175684 ~ 17177230 (-)
G256368 NA non-coding downstream 84731 17103732 ~ 17106368 (-)
G256313 NA non-coding downstream 142100 17048652 ~ 17048999 (-)
G256296 NA non-coding downstream 156891 17033891 ~ 17034208 (-)
G256223 NA non-coding downstream 316332 16874562 ~ 16874767 (-)
G256413 NA non-coding upstream 21772 17214844 ~ 17240869 (-)
LOC113530885 NA non-coding upstream 124566 17317638 ~ 17320983 (-)
LOC113530886 NA non-coding upstream 128350 17321422 ~ 17323140 (-)
G256567 LOC108441107,LOC106572068 non-coding upstream 430113 17623185 ~ 17623422 (-)
G256569 NA non-coding upstream 433247 17626319 ~ 17628461 (-)
dazap2 dazap2 other downstream 319935 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 352450 16787801 ~ 16838649 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other downstream 496068 16647823 ~ 16695031 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 1370858 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 1873734 15258485 ~ 15317365 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 691171 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 1092414 18285486 ~ 18300687 (-)
LOC113530839 LOC108275928,LOC108425553 other upstream 1316076 18509148 ~ 18531252 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 1743505 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 2177615 19370687 ~ 19387041 (-)

Expression



Co-expression Network