G256475


Basic Information

Item Value
gene id G256475
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17667717 ~ 17670603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303542
TAACAacttactaattattattactaattattattaaataattatcacATACAACATAGGCAACTATACCATATAAGAGCAGGTACTGTAAATGCTTCCTAGGTGAGCACTCATGGTAGAGTTTAGCTATTCCTAGCAAAGACATAGTAACTCAGTGCAGATAAGTGGACATGGAAAAAGCCTTATTAGCCTTTCATGTTATATAAAAGCACATAGCTTTACTCATTTCAATTCAAGAAATTCTGCCCTGATAAGGATTATGGATTACaccttatatttattattacagtttccAGAACAGATTAAACAAAAAGCAGCAGTCATAGTGGTGTTATTTAACAGTATTACATATTACTATTaaccatttctttaaaaaaaaaagcaatggctAGGTTtctttttaactgtaaaaaaagtTCTCGGTCATATTTACAGAGCAAAGACATGTTAATTTAACCTCTAATTCTCAGGTAAGAATGTGAAGCAAATCCAAAACATTACTGACAATATAGAGACTGAGATTGTACTGCCATCAGATAAACCCTGCTTTAGTGTAATATGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303542 True 564 lncRNA 0.31 2 17667717 17670603

Neighbor

gene id symbol gene type direction distance location
plxna2 plxna2,LOC108425528,LOC107594012 coding upstream 40659 17427302 ~ 17627058 (+)
hrct1 LOC108276455 coding upstream 473471 17189879 ~ 17194246 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding upstream 492204 17172192 ~ 17175513 (+)
csrnp2 csrnp2 coding upstream 633441 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 707151 16936562 ~ 16960566 (+)
si:ch211-66i15.4 NA coding downstream 68668 17739271 ~ 17746529 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding downstream 522594 18193197 ~ 18240912 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding downstream 676172 18346775 ~ 18351473 (+)
cd40 NA coding downstream 819878 18490481 ~ 18497402 (+)
casp9 casp9 coding downstream 940550 18611153 ~ 18620055 (+)
G256466 NA non-coding upstream 231944 17433566 ~ 17435773 (+)
G256459 NA non-coding upstream 263347 17404139 ~ 17404370 (+)
G256448 NA non-coding upstream 339127 17328385 ~ 17328590 (+)
G256426 NA non-coding upstream 385217 17281320 ~ 17282500 (+)
G256425 NA non-coding upstream 400985 17266510 ~ 17266732 (+)
LOC117599208 NA non-coding downstream 32484 17703087 ~ 17729053 (+)
G256627 NA non-coding downstream 76551 17747154 ~ 17747710 (+)
G256660 NA non-coding downstream 119908 17790511 ~ 17790906 (+)
G256726 NA non-coding downstream 207010 17877613 ~ 17878486 (+)
G256771 NA non-coding downstream 272548 17943151 ~ 17943355 (+)
LOC113530386 slc26a9 other upstream 479340 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 542766 17071136 ~ 17124951 (+)
G256046 NA other upstream 1159337 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 1271472 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 1341103 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1208878 18879481 ~ 18934319 (+)
pkig NA other downstream 1527823 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 1807699 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 1954926 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 2720206 20390809 ~ 20398714 (+)

Expression


Co-expression Network