kcng1 (kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732)


Basic Information

Item Value
gene id kcng1
gene name kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17884243 ~ 17913277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303854
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctctgtGATGGCTGGCACACCTGCCTTGTGCCACAAGTCTCCTGGGTAGgctcccctgcaaccctgtgtaagATAAGTGGCATGGAAGGTATTCATGGATCAAAGGTATTCCAAAGACTGttagtatacactatatggccaaaagtatgtggacacctaaatATTCCCCCATATGAGGGTTAAACATTtgccacaaaacacacaattgtctagaacgtctttgtattctgtagcattaagatttcccttcaagAACTAAGACATCCAAACATATtgcagcatgacagtgccccgtgcacaaagtgaggtctgtAAAGTTTGCCAAAGTTGATATGGAAGAACTAGAGTGACCTgcgcagagccctgacctcaatcccactgaacacgttTAACGTTTAAAGAttaactgcaccccaggcctcctcgtctGACaacagtgcctgacctcactaatgctcttctgactgaatgagcacaacagccatactccaaaatctagaggaGAGCCTTCCCAAGaaagtagaggttattataacagcaaaaaggggggactaaaactcaaatgggatgttcaaaaagctcATATGAGTGTGAGGGTTAGGTTTCCACAGATATTTAgcccatatagtgtgtgtgtgtgtgtgtgtgtgtcccaaatTTGAAAATATGCCATCccaaatgtcattaaaaatgattttcactCAGTTTTCACAAAATGGTAAGCTATGCTTCTTTAgaatatgataataatatttttccatCACACATGTAGGTAGTCAACACTTTGAGGATCATGTGATGgggtatttttgttttattaatggaaGAAAGCTTAAACAAAGTGGAAATTCAAAGAACTGTCCTGATATATCTGAATTCACCCtattaaaatgcacattgtaTACATTGTTCTTTCTAACCGTCACAATTCCCAtgatattaaaaacacaaaggaGGGTCCCATGTTAAAGTAATTAAGCAAACTACTTATTCCTTGAATGGTTCGAACCTGTaatctattatattatatgtacgTATTTATTCCTCATAATATTTCAGAATATTGCCAACTTCAAAGCACGAGTTTAAATCTAAAGAAAGTTCCTGTCCTACACTATATGCTATTAAAGCGCAATGCCCTTAAGCTACAGTAAAGacattaaacacaataaacacataaaGACCAACATCATTGGTCTTCTCTATTACTGTTGTCAAGTTTCCAAAATGACTTCAGCATTCACATTTTGTATAACGACTTGAAGGGTGATTTctta
>TU303855
CTGTAGCCTGTTGCTTATGTTCCTCAGATGTGCCGCTAGCACTCACTGAACAACACAGTCGAAGTGGAGTTGAAGCTCTGAGCAGCAGCTCGcacttctccttctcttctccttGTGACCTTTATCTTCTCTCATCTGACCTCCATCTTTTctcaaatatataaacatgatGAACACATCCGGCTGCAGACAAACCGGATCAACCCTGTGGTGAGGGCCAGTGAATAATTGCTGGCCTCCAGGCATGTGAGGCGCTCTGAGATTGGAGGTGTCCGGGTGAAAGATGACTTTACTGGCTGGCGATGGCTCTGACTATGACTACAGTGCCTTGAGCTGCATCTCGGACACCTCACTGAACCCACCACCCATCCAGGATAGCGAGGCCCTTAAGGGTGTTTACTACAAACGTGCTCGGTGTCTTGCTAAGGATCCTGATGCTGATGCCAGCCTCTTGCCTGGCACCCAACGCTTACATGCCATCATCAATGTGGGTGGCCTGCGCTACCAGTTGCCATGGAGCACGCTGGATGACTTCCCACTGTCACGGCTAGGCCGTCTGCGTCTGTGTACAAGCTTCGACGagatcatgtgtgtgtgcgacGACTACGATGTGGCTCGCAATGAGTTTTTCTTCGACCGAAGCCCATGTGCTTTCCGTGCCATCCTGACATTCCTGCGTGCGGGCAAGCTGCGTGCTTTGAGAGACACTTGTGCTCTGTCCTTCCAAGAAGAACTGCTGTACTGGGGTGTCCCAGAGGAAAAGCTGGAGTGGTGCTGCCGAAGGCGCCTGATTCAGCGCATAGAGGAGCGTGATGAGCTTGAAAGGGTGGCcgaggaagatgaggaagaggaagatgatgagAGTGATGGAGGTGGTAGGGAGGGAGGCCTGGATAGAGAATCTCGAGCGGGCCGCTGCATGGTCAAGCTAAGGGACATGGTGGAAAGGCCGCACTCAGGTCTTCCTGGAAAGATCTTCGCTTGCCTCTCAGTGCTCTTTGTCACCATCACAGCCATTAATCTGTCCATAAGCACCATGCCTGCCATGAGGGAGGAGGAAGAAGCTG
>XM_026920580.2
CCTCAGATGTGCCGCTAGCACTCACTGAACAACACAGTCGAAGTGGAGTTGAAGCTCTGAGCAGCAGCTCGcacttctccttctcttctccttGTGACCTTTATCTTCTCTCATCTGACCTCCATCTTTTctcaaatatataaacatgatGAACACATCCGGCTGCAGACAAACCGGATCAACCCTGTGGTGAGGGCCAGTGAATAATTGCTGGCCTCCAGGCATGTGAGGCGCTCTGAGATTGGAGGTGTCCGGGTGAAAGATGACTTTACTGGCTGGCGATGGCTCTGACTATGACTACAGTGCCTTGAGCTGCATCTCGGACACCTCACTGAACCCACCACCCATCCAGGATAGCGAGGCCCTTAAGGGTGTTTACTACAAACGTGCTCGGTGTCTTGCTAAGGATCCTGATGCTGATGCCAGCCTCTTGCCTGGCACCCAACGCTTACATGCCATCATCAATGTGGGTGGCCTGCGCTACCAGTTGCCATGGAGCACGCTGGATGACTTCCCACTGTCACGGCTAGGCCGTCTGCGTCTGTGTACAAGCTTCGACGagatcatgtgtgtgtgcgacGACTACGATGTGGCTCGCAATGAGTTTTTCTTCGACCGAAGCCCATGTGCTTTCCGTGCCATCCTGACATTCCTGCGTGCGGGCAAGCTGCGTGCTTTGAGAGACACTTGTGCTCTGTCCTTCCAAGAAGAACTGCTGTACTGGGGTGTCCCAGAGGAAAAGCTGGAGTGGTGCTGCCGAAGGCGCCTGATTCAGCGCATAGAGGAGCGTGATGAGCTTGAAAGGGTGGCcgaggaagatgaggaagaggaagatgatgagAGTGATGGAGGTGGTAGGGAGGGAGGCCTGGATAGAGAATCTCGAGCGGGCCGCTGCATGGTCAAGCTAAGGGACATGGTGGAAAGGCCGCACTCAGGTCTTCCTGGAAAGATCTTCGCTTGCCTCTCAGTGCTCTTTGTCACCATCACAGCCATTAATCTGTCCATAAGCACCATGCCTGCCATGAGGGAGGAGGAAGAAGCTGGCAAATGCTCCCAGATGTGCTACAACATCTTCATCgtggagactgtgtgtgtggcgtgGTTTAGTCTCGAGTTCACACTGCGCTTCATTCAGGATCGCAGGAAGCTGGCCTTCCTCCGGCGTCCGCTCAATCTGATTGACGTGGTGGCCATCTTGCCCTACTACATCACCCTGGCTGTGGACGGCACCTCCACGGGCTCGGGCAGCAGCTATCTGGACAAAGTCGGGCTTGTTCTGCGCGTCCTGCGGGCTCTGCGCATCCTGTACGTGATGCGTTTGGCTCGGCATTCACTCGGTCTGCAGACGCTGGGCCTTACCGCACGCCGCTGCACACGCGAGTTtggcctgctgctgctgttcctgtGCGTGGCCATCGCGCTCTTCTCCCCGCTCCTGTACCTCATTGAGAATGAGGTGGCGGCCACGCAGGAGTTCAGCAGCATCCCGGCCACGTACTGGTGGGCGGTGATTACAATGACGACGGTGGGCTACGGTGACATGGTGCCACGCAGTATACCTGGCCAGGTGGTGGCGCTCAGCAGCATCCTGAGCGGCATCCTGCTGATGGCCTTCCCCGTGACATCCATCTTCCACACCTTCTCCCGGTCCTACGTGGAGCTGAAGCAGGAGCAGCAGCGCCTCCTGCAGCGGCGGACTCACTTCCTCCTGCGCGGGCGCGTGCCTGGTCTCGGCAGTAATGCGTCACTAGAGAGTGACGTCCTGTTTCCCAGCGCCTCGTCCGACCCGAGAGACCTcgatgactgaaaaaaaaaatagacaggaataaaaacaaaacaaatggcgTGAATAAGGACAGAGAACTTTTGTCAGTCTTAGACACATTCAGCAATCTGAATTAGGTCGTCACTTTTGAAACTGAGCTCAAAGCGTGCTCAGCTGTTTTTCAGGAGTCAGGCTTTAACTGACACAGGGTGAATTCAGATATATTGAGACATCagataaattataaaatctTTTAAGTGGTGGTTTCCTACTTCTATTCTTACTTTGGATAGACTGAAAAAAGTATTCGATGaacatttatacatctgagTAGTTAATGGTTAAGTGTCTTGCTCAGGGGCCTGGTGGTGGCAGTGCAGGGGTTTAAACTcgtgaccttctgatcagtagtccaacgtcttaaccactgagctaccactgtgACTGACAACATgttcattgcttatattaaatttaatttaaacgaGTTTCTACGCATTAGCTTGAATGACGTAGAGTGAGCATTCATGCCCATGTAGTATTGTGCATTGACAATTCATGTAGTAGACATTAGAATCTCGCGAGACTGCTGGTACTGACGGGATTATAACTAACTGCTGTGTTGTGTAGTGCAGCGGTAATGTAGCTGTTACAGAACGCCAGTGATCAGGGGGAAGAAATCgattttattcagggctttgaaaatacatgatcaaatgaTGGATCTaggaaaacaaattgtgttactGTAACTCAATTAAATCATATGGAACCCATGTTCGCATTTAAATTAACTAAAttcaatgagctttttttttgctcagtgtatgaatttgaaaaaaaaaatcaaaaatgttcTGGGTGGGAGGGCACATGGCTTAGTgtttagcactgttgcctcacacttCGGGGGTTGCGGGTTCAAagcctgcctctgccctgtgtgcacagtctgcatgctctccctgtgcttcaggggtttccttccccagtctaaacacatgcattgtaggctgattggcatttccatgttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctctgtGATGGCTGGCACACCTGCCTTGTGCCACAAGTCTCCTGGGTAGgctcccctgcaaccctgtgtaagATAAGTGGCATGGAAGGTATTCATGGATCAAAGGTATTCCAAAGACTGttagtatacactatatggccaaaagtatgtggacacctaaatATTCCCCCATATGAGGGTTAAACATTtgccacaaaacacacaattgtctagaacgtctttgtattctgtagcattaagatttcccttcaagAACTAAGACATCCAAACATATtgcagcatgacagtgccccgtgcacaaagtgaggtctgtAAAGTTTGCCAAAGTTGATATGGAAGAACTAGAGTGACCTgcgcagagccctgacctcaatcccactgaacacgttTAACGTTTAAAGAttaactgcaccccaggcctcctcgtctGACaacagtgcctgacctcactaatgctcttct

Function

symbol description
kcng1 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of delayed rectifier potassium channel activity. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNG1 (potassium voltage-gated channel modifier subfamily G member 1).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily G member 1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04900 KCNG1, KV6.1; potassium voltage-gated channel subfamily G member 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU303854 False 1311 lncRNA 0.39 2 17884243 17885579
TU303855 False 1067 TUCP 0.54 2 17893081 17913277
XM_026920580.2 True 3299 mRNA 0.50 3 17885084 17913256

Neighbor

gene id symbol gene type direction distance location
src LOC108276199,LOC108425539,LOC107590469,LOC107754892,LOC103385228,LOC107558752,LOC107738191 coding downstream 226 17832401 ~ 17884017 (-)
mical1 LOC108276121 coding downstream 56284 17791380 ~ 17827959 (-)
camk1gb camk1g,LOC108425536,LOC107590467 coding downstream 105393 17766209 ~ 17778850 (-)
g0s2 g0s2 coding downstream 127688 17755592 ~ 17756555 (-)
taf8 taf8,LOC107594013,LOC107671856,LOC107723763,LOC107549030 coding downstream 129899 17747282 ~ 17754344 (-)
nfatc2a nfatc2 coding upstream 32410 17945687 ~ 17973544 (-)
LOC113530442 atp9a,LOC107697879,LOC107664207,LOC106567116 coding upstream 72230 17985507 ~ 18032167 (-)
sall4 sall4,LOC107735783 coding upstream 119179 18032456 ~ 18039804 (-)
zfp64 zfp64 coding upstream 162041 18075318 ~ 18085292 (-)
bcas1 bcas1 coding upstream 394977 18308254 ~ 18339653 (-)
G256689 NA non-coding downstream 93336 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 150194 17733806 ~ 17734049 (-)
G256622 NA non-coding downstream 151780 17732097 ~ 17732463 (-)
G256613 NA non-coding downstream 162310 17721723 ~ 17721933 (-)
G256598 NA non-coding downstream 184846 17699198 ~ 17699397 (-)
G256929 NA non-coding upstream 435566 18348843 ~ 18349692 (-)
G257322 NA non-coding upstream 739816 18653093 ~ 18653315 (-)
LOC113530357 NA non-coding upstream 895786 18809063 ~ 18863122 (-)
G257458 NA non-coding upstream 1021620 18934897 ~ 18936391 (-)
G257471 NA non-coding upstream 1026205 18939482 ~ 18939782 (-)
dazap2 dazap2 other downstream 1013079 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 1045594 16787801 ~ 16838649 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other downstream 1189212 16647823 ~ 16695031 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 2064002 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 2566878 15258485 ~ 15317365 (-)
znf217 znf217 other upstream 372209 18285486 ~ 18300687 (-)
LOC113530839 LOC108275928,LOC108425553 other upstream 595871 18509148 ~ 18531252 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 1023300 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 1457410 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 1518173 19431450 ~ 19437634 (-)

Expression


Co-expression Network