G257127


Basic Information

Item Value
gene id G257127
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18891889 ~ 18936842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304354
tttttttttttttttttttttttttttttttacattttgtacagtGTTCTCGCTCTCTTGTTGCTTTTCTTCCGGTGTTGTAAAGGCATGGGGGTCTGTGGGAGGGCAGGTGGGTGGGCAGACAGGTGGGCACAGCTTGGTGCAGGCAGCTCTATGCCAGCGGGTCACCCATGTCCTCATCCCCTGCAGACAGAAGCTCCTTCTTCTCGTCCGTGCTGGCCAGAGAGTTGCGGCTGTTGTGGGCGCCCATGTAGAGCGTAGCGTACACCGGGTTGGTGAAGTTTGTGGGC
>TU304358
aaaaaaaaaaaacaaaaaaaaaagttcccatCAGAGTGAAGTGGTCTGCAAAAGCACTTCTTTAAAATCCCTTTAACGATCCGTTCCTCGTTTTGTCCTCATGGTCCCGGACCTCCTGGAAGACGCAGCATCGGGGGGACACGTACACTGCTCCACTGTCCACTCATCAGTCTATTTTTCTTCCCTAATTCAAACGAATCATGTCCATGGACTGCTGACACACTTGCATACACACAGGCAACAAATACACACCCTGGAATGTTctcataaaaaaatgtcattttacttTCAACacgtttcattcattcattcatccatccatccatcttcaatCTCTAAAAGCACTCAAAGCGTTACATCCTGCTGTCCCTTTACCTGCTTGTATTCCTGTGTATTTGTTACACACTcatgttaaaatgtatattatgtaaataGATATAAAATCAAATCTGTGCAACAAATAAGACAATCATAAGCCTAATTTAGCacgcatacacactcactcactcacacacacacacacacacacacacacacacacacacacacctctctcctCCAGCAGTACCAATACACATACGAACAGATCTGGTACCATCATTGGGATTCGGGATTGAACCCGCCCCCTCCTCTCCCTTACTGGTTCACTGACaacaataacagaaaaaaataaatcttggctATTTCCTCAACTTCTATACAATTcatacaaaaaaaggaaaaaaaaaacaaacaaacaaaaaaaaaaacaattccatAGCTGTTACGGTTGTTTGCGTTCTCATTTAGCACAGAGGTAGAGGCT
>TU304359
ttaaaaacaaacaaaaaaaaaaaaaaagttcccatCAGAGTGAAGTGGTCTGCAAAAGCACTTCTTTAAAATCCCTTTAACGATCCGTTCCTCGTTTTGTCCTCATGGTCCCGGACCTCCTGGAAGACGCAGCATCGGGGGGACACGTACACTGCTCCACTGTCCACTCATCAGTCTATTTTTCTTCCCTAATTCAAACGAATCATGTCCATGGACTGCTGACACACTTGCATACACACAGGCAACAAATACACACCCTGGAATGTTctcataaaaaaatgtcattttacttTCAACacgtttcattcattcattcatccatccatccatcttcaatCTCTAAAAGCACTCAAAGCGTTACATCCTGCTGTCCCTTTACCTGCTTGTATTCCTGTGTATTTGTTACACACTcatgttaaaatgtatattatgtaaataGATATAAAATCAAATCTGTGCAACAAATAAGACAATCATAAGCCTAATTTAGCacgcatacacactcactcactcacacacacacacacacacacacacacacacacacacacacctctctcctCCAGCAGTACCAATACACATACGAACAGATCTGGTACCATCATTGGGATTCGGGATTGAACCCGCCCCCTCCTCTCCCTTACTGGTTCACTGACaacaataacagaaaaaaataaatcttggctATTTCCTCAACTTCTATACAATTcatacaaaaaaaggaaaaaaaaaacaaacaaacaaaaaaaaaaacaattccatAGCTGTTACGGTTGTTTGCGTTCTCATTTAGCACAGAGGTAGAGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304354 False 290 lncRNA 0.52 2 18909837 18936842
TU304358 False 805 lncRNA 0.39 2 18895857 18936419
TU304359 True 809 lncRNA 0.39 2 18891889 18936419

Neighbor

gene id symbol gene type direction distance location
esyt1a LOC108276191 coding upstream 14543 18850483 ~ 18877346 (+)
pa2g4b pa2g4b,LOC108276026,LOC108425565,LOC107737517,LOC107593906,LOC107668344,LOC107591063,LOC107716155,LOC107673109 coding upstream 54949 18829063 ~ 18836940 (+)
erbb3b erbb3 coding upstream 65784 18786766 ~ 18826105 (+)
si:dkey-151g10.3 LOC108276398,LOC108425563,LOC107737519,LOC107673054 coding upstream 112232 18725277 ~ 18779657 (+)
fam3a fam3a,LOC102798212,LOC106567024 coding upstream 170729 18703452 ~ 18721160 (+)
LOC117599226 LOC108275925 coding downstream 33152 18969994 ~ 18971248 (+)
trnae-cuc_34 NA coding downstream 96075 19032917 ~ 19032988 (+)
rbms2b rbms2b,LOC108275993,LOC108425569,LOC107716168,LOC107737513 coding downstream 154168 19091010 ~ 19117563 (+)
r3hdml r3hdml coding downstream 224371 19161213 ~ 19165261 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408 coding downstream 230459 19167301 ~ 19187959 (+)
LOC113530356 NA non-coding upstream 45542 18841753 ~ 18846347 (+)
G257068 NA non-coding upstream 270584 18620249 ~ 18621305 (+)
G256899 bcas1 non-coding upstream 563633 18322069 ~ 18328256 (+)
G256851 zfp64 non-coding upstream 811557 18078167 ~ 18080332 (+)
G256852 NA non-coding upstream 814077 18076948 ~ 18077812 (+)
G257196 NA non-coding downstream 129012 19065854 ~ 19066133 (+)
G257199 NA non-coding downstream 181035 19117877 ~ 19118533 (+)
G257235 NA non-coding downstream 296161 19233003 ~ 19235261 (+)
G257232 NA non-coding downstream 304270 19241112 ~ 19241568 (+)
G257234 NA non-coding downstream 306343 19243185 ~ 19245707 (+)
LOC113530386 slc26a9 other upstream 1703512 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 1766938 17071136 ~ 17124951 (+)
G256046 NA other upstream 2383509 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2495644 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 2565275 16232013 ~ 16326614 (+)
pkig NA other downstream 261584 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 541460 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 688687 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1453967 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1573402 20510244 ~ 20514195 (+)

Expression


Co-expression Network