LOC113530357


Basic Information

Item Value
gene id LOC113530357
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18809063 ~ 18863122 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304681
TCATACATCTCCCTCCACTGCGGGTTGAGGTTGTTGTCCACATGGCGTGACGTGAACGTTTGCGTGCCAACCCTCACTACGGCATACGGGTCCGACTTGCCAGTGATCACGCGCTTGATGTAGCTATCCTTGGCGGCCAGGTTCTCGGCTTCCAGCAAGTGGATCCGCACGATGCCCTGCGGAAAAGAGGATGAATCACATATTTctgatggaaaaagagagaatagGAACATTCAGCAGGCAGAATCCAGCTGGAGACAccggaggaaacccagacaCAACATGGGAAGTACATGCTTTCACACAGAGAGCAGTCcaagctcaggatggaaccagggaccctggagctttgAGGCAGCCATGTTAGCCACAACAGCTTGCTGTCACAACTGGTCCAATACCAGAACATTTAGTAAAATGGCTGCTGCAGGGAGCCATCAACAGGccactttgtttgttttgctaaccaaaacaagacaatattaaactttttgtaaataataGATTTTCCATGTTCTATTTAGTAGACTAAAGAACAGATCTGTTCAGGGCATTATTTGCAGTTACATTAACACGGATACCATGTAGATGAGCATGGAAAGGAATGTCCACTATAAGTCAGAAAAAGCTTGTGTGGCtaaaggttttcattccaaacaaATGCTTGCCATAAAACCCTCAACCACTCCCTTTGCATACTGGCCTTAAGAAAAGGTACAGAATCATTTAACAAGCcgggagcattttttttttttttttaaaaaagctgaaGTTCAATTTTAACCATTTTCATACATGTACTTCACTACAATTCCTACAACCCTAGCCCAATTTACATACACCCACTGAATAGATCGATCTTGGGAGACTAGTTCATCTGTTGGCAAGCACAAATCAGCACCTAGCCTATACCATATTTGTTCCTGTCAGTGGGGTGGAGACTTTTGAATGAGGCAAAAAATTACTCAGGGGTAACTtaccaaaaagacaaaaatccaaatacagaaCATGCAATATTACTTCCACATGCATGTGTAGCAGTAAAGACTAGCAGAGTGGCAGCTTAATTAGGTGCATCTTGCACTGCAGTGAAAGTCACAAGCCACACCATTACcaaaattgcattaaatatCAATCTGTTAGTGACCTGGTCACTCTAAATAGccatataaaacatttaagtaTTCAAGACGTCCATGGACAGTCCATAGCGTCTCAAATTGTTTTAGCAAAATATTCATACCTCAAACTATTCCAACACTTACTCTGCAAACTTGCATCTTGATTCCTACCTAGTAGGTGGTTTAGGTCTGCATAATCATTCAGCCAGAGCACAACAGTAGATTTTAAGCCAAACTTTTATTGAACAGGTATTAACAAAAGACGCTGCACTGGCAAGTCCAAGAGAGCTTCTAAGGTCAAGACCAACACCCAACTGGACAGCCTGGAGATGGAAGCTTTCTCCATCACACTCGACTGGCTTCACAGGAGATGGACAGCACCTTCAGATGGACTTTTCCAGAAGACTCTCAAAGGGAATCCAAGATGAACAGGACCTCAGCTGCAGCAGAGAGGTTGCAGTTTACTTGGACCTCTGCCTCATCTTTCTCCTTTTACGCTTCagcctggggaaaaaaatatatatatatatattcagactTCCCCCAATGCCACATGAATATTCAATAATTAAAGGTGATCAGCGGACAAAAagtacacacacttacaggtGAAGCGACCTTCCACGTATAGTGGTAAGATTggagaaaaatgacaaatccTTCAGCTCTGCAGGCCAAGACTGAATATTCA
>TU304682
GTGGAATGTGATGGTGTTAATGTGGAATGGGGGAGGAGAGGAACACGGCAAACAGGGAGTAGGAGAGGACATAGAGGAGCAGAATTAACAGTTTTGGCCCAGAGCATGTGATATGAATAAAATTTGAGAGAATAGGTGCAGtgaaaaacaggacaaaagtGTCTATCAGCTTCCTTTGTGCACACAGGCAGAATCCAGCTGGAGACAccggaggaaacccagacaCAACATGGGAAGTACATGCTTTCACACAGAGAGCAGTCcaagctcaggatggaaccagggaccctggagctttgAGGCAGCCATGTTAGCCACAACAGCTTGCTGTCACAACTGGTCCAATACCAGAACATTTAGTAAAATGGCTGCTGCAGGGAGCCATCAACAGGccactttgtttgttttgctaaccaaaacaagacaatattaaactttttgtaaataataGATTTTCCATGTTCTATTTAGTAGACTAAAGAACAGATCTGTTCAGGGCATTATTTGCAGTTACATTAACACGGATACCATGTAGATGAGCATGGAAAGGAATGTCCACTATAAGTCAGAAAAAGCTTGTGTGGCtaaaggttttcattccaaacaaATGCTTGCCATAAAACCCTCAACCACTCCCTTTGCATACTGGCCTTAAGAAAAGGTACAGAATCATTTAACAAGCcgggagcattttttttttttttttaaaaaagctgaaGTTCAATTTTAACCATTTTCATACATGTACTTCACTACAATTCCTACAACCCTAGCCCAATTTACATACACCCACTGAATAGATCGATCTTGGGAGACTAGTTCATCTGTTGGCAAGCACAAATCAGCACCTAGCCTATACCATATTTGTTCCTGTCAGTGGGGTGGAGACTTTTGAATGAGGCAAAAAATTACTCAGGGGTAACTtaccaaaaagacaaaaatccaaatacagaaCATGCAATATTACTTCCACATGCATGTGTAGCAGTAAAGACTAGCAGAGTGGCAGCTTAATTAGGTGCATCTTGCACTGCAGTGAAAGTCACAAGCCACACCATTACcaaaattgcattaaatatCAATCTGTTAGTGACCTGGTCACTCTAAATAGccatataaaacatttaagtaTTCAAGACGTCCATGGACAGTCCATAGCGTCTCAAATTGTTTTAGCAAAATATTCATACCTCAAACTATTCCAACACTTACTCTGCAAACTTGCATCTTGATTCCTACCTAGTAGGTGGTTTAGGTCTGCATAATCATTCAGCCAGAGCACAACAGTAGATTTTAAGCCAAACTTTTATTGAACAGGTATTAACAAAAGACGCTGCACTGGCAAGTCCAAGAGAGCTTCTAAGGTCAAGACCAACACCCAACTGGACAGCCTGGAGATGGAAGCTTTCTCCATCACACTCGACTGGCTTCACAGGAGATGGACAGCACCTTCAGATGGACTTTTCCAGAAGACTCTCAAAGGGAATCCAAGATGAACAGGACCTCAGCTGCAGCAGAGAGGTTGCAGTTTACTTGGACCTCTGCCTCATCTTTCTCCTTTTACGCTTCagcctggggaaaaaaatatatatatatatattcagactTCCCCCAATGCCACATGAATATTCAATAATTAAAGGTGATCAGCGGACAAAAagtacacacacttacaggtGAAGCGACCTTCCACGTATAGTGGTAAGATTggagaaaaatgacaaatccTTCAGCTCTGCAGGCCAAGACTGAATATTCA
>TU304683
tttcttttttTAGATTTTAAGCCAAACTTTTATTGAACAGGTATTAACAAAAGACGCTGCACTGGCAAGTCCAAGAGAGCTTCTAAGGTCAAGACCAACACCCAACTGGACAGCCTGGAGATGGAAGCTTTCTCCATCACACTCGACTGGCTTCACAGGAGATGGACAGCACCTTCAGATGGACTTTTCCAGAAGACTCTCAAAGGGAATCCAAGATGAACAGGACCTCAGCTGCAGCAGAGAGGTTGCAGTTTACTTGGACCTCTGCCTCATCTTTCTCCTTTTACGCTTCagcctggggaaaaaaatatatatatatatattcagactTCCCCCAATGCCACATGAATATTCAATAATTAAAGGTGATCAGCGGACAAAAagtacacacacttacaggtGAAGCGACCTTCCACGTATAGTGGTAAGATTggagaaaaatgacaaatccTTCAGCTCTGCAGGCCAAGACTGAATATTCA
>XR_003403141.2
CAGGGAGTAGGAGAGGACATAGAGGAGCAGAATTAACAGTTTTGGCCCAGAGCATGTGATATGAATAAAATTTGAGAGAATAGGTGCAGtgaaaaacaggacaaaagtGTCTATCAGCTTCCTTTGTGCACACAGGCAGAATCCAGCTGGAGACAccggaggaaacccagacaCAACATGGGAAGTACATGCTTTCACACAGAGAGCAGTCcaagctcaggatggaaccagggaccctggagctttgAGGCAGCCATGTTAGCCACAACAGCTTGCTGTCACAACTGGTCCAATACCAGAACATTTAGTAAAATGGCTGCTGCAGGGAGCCATCAACAGGccactttgtttgttttgctaaccaaaacaagacaatattaaactttttgtaaataata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304681 True 1812 lncRNA 0.43 3 18809063 18860788
TU304682 False 1759 lncRNA 0.41 3 18809063 18852217
TU304683 False 482 lncRNA 0.43 3 18809063 18863122
XR_003403141.2 False 398 lncRNA 0.45 2 18844075 18852165

Neighbor

gene id symbol gene type direction distance location
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding downstream 105139 18693407 ~ 18703924 (-)
avpr2aa avpr2,LOC108275493 coding downstream 133851 18657095 ~ 18675212 (-)
LOC117595686 plekhg5,LOC107714916,LOC107697827,LOC107664198 coding downstream 201645 18565524 ~ 18607418 (-)
plekhg5b plekhg5 coding downstream 243536 18540263 ~ 18565527 (-)
irx7 LOC108275649,LOC107751843 coding downstream 307252 18500181 ~ 18501811 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding upstream 255909 19119031 ~ 19127613 (-)
trnak-uuu_17 NA coding upstream 265342 19128464 ~ 19128536 (-)
LOC113530333 faim2 coding upstream 266986 19130108 ~ 19142474 (-)
fitm2 fitm2 coding upstream 280615 19143737 ~ 19148012 (-)
ada ada coding upstream 368724 19231846 ~ 19251695 (-)
G257322 NA non-coding downstream 155748 18653093 ~ 18653315 (-)
G256929 NA non-coding downstream 459371 18348843 ~ 18349692 (-)
G256689 NA non-coding downstream 1018156 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 1075014 17733806 ~ 17734049 (-)
G256622 NA non-coding downstream 1076600 17732097 ~ 17732463 (-)
G257458 NA non-coding upstream 71775 18934897 ~ 18936391 (-)
G257471 NA non-coding upstream 76360 18939482 ~ 18939782 (-)
LOC117599228 NA non-coding upstream 254727 19117849 ~ 19119020 (-)
LOC113530339 r3hdml non-coding upstream 295169 19158291 ~ 19178092 (-)
G257518 NA non-coding upstream 325555 19188677 ~ 19231641 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 277811 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 508376 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 895786 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 1937899 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 1970414 16787801 ~ 16838649 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 73455 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 507565 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 568328 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 619971 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 1237877 20100999 ~ 20109212 (-)

Expression


Co-expression Network