G257458


Basic Information

Item Value
gene id G257458
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18934897 ~ 18936391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304741
GCAAACAACCGTAACAGCTatggaattgtttttttttttgtttgtttgttttttttttcctttttttgtatgAATTGTATAGAAGTTGAGGAAATagccaagatttatttttttctgttattgttGTCAGTGAACCAGTAAGGGAGAGGAGGGGGCGGGTTCAATCCCGAATCCCAATGATGGTACCAGATCTGTTCGTATGTGTATTGGTACTGCTGGaggagagaggtgtgtgtgtgtgtgtgtgagtgagtgagtgtgtatgcgtGCTAAATTAGGCTTATGATTGTCTTATTTGTTGCACAGATTTGATTTTATATCtatttacataatatacattttaacatgAGTGTGTAACAAATACACAGGAATACAAGCAGGTAAAGGGACAGCAGGATGTAACGCTTTGAGTGCTTTTAGAGattgaagatggatggatggatgaatgaatgaatgaaacgtGTTGAaagtaaaatgacatttttttatgagAACATTCCAGGGTGTGTATTTGTTGCCTGTGTGTATGCAAGTGTGTCAGCAGTCCATGGACATGATTCGTTTGAATTAGGGAAGAAAAATAGACTGATGAGTGGACAGTGGAGCAGTGTACGTGTCCCCCCGATGCTGCGTCTTCCAGGAGGTCCGGGACCATGAGGACAAAACGAGGAACGGATCGTTAAAGGGATTTTAAAGAAGTGCTTTTGCAGACCACTTCACTCTGatgggaactttttttttttttttttttttttttttttttttaaaataatcataaactgCTTACACACAAAGCTACAGCCGTTTCGGTACtcctgtttatttgttttaattgtttgtttttttttctttttatatatgcAGAATAATTAAACTGCTTTTTATAGTAGAAATGCATGGTGGCTCAGCCCTTCTTTTGGAAAGACAGAGTAACGTTTCACTATTTTTTTGCTGGAGAACTTCATAAACTACAGAAAAGTAACggatattgttataattatgaaataaaatcagtgtgtaCAGAAAAGAGATGTGGCTTCTGGTTCTGCATCTGAGAAGGAAATGGCATACACTGatgattaaaggtgcagtttgtaatgtgtAAAATTCTTCCTAGACCTTTAGTAATCACAGAATTTTAAAGAGACATTAGAAAAATTGTGATTCATAATACAGATGCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304741 True 1184 lncRNA 0.36 3 18934897 18936391

Neighbor

gene id symbol gene type direction distance location
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding downstream 230973 18693407 ~ 18703924 (-)
avpr2aa avpr2,LOC108275493 coding downstream 259685 18657095 ~ 18675212 (-)
LOC117595686 plekhg5,LOC107714916,LOC107697827,LOC107664198 coding downstream 327479 18565524 ~ 18607418 (-)
plekhg5b plekhg5 coding downstream 369370 18540263 ~ 18565527 (-)
irx7 LOC108275649,LOC107751843 coding downstream 433086 18500181 ~ 18501811 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding upstream 182640 19119031 ~ 19127613 (-)
trnak-uuu_17 NA coding upstream 192073 19128464 ~ 19128536 (-)
LOC113530333 faim2 coding upstream 193717 19130108 ~ 19142474 (-)
fitm2 fitm2 coding upstream 207346 19143737 ~ 19148012 (-)
ada ada coding upstream 295455 19231846 ~ 19251695 (-)
LOC113530357 NA non-coding downstream 71775 18809063 ~ 18863122 (-)
G257322 NA non-coding downstream 281582 18653093 ~ 18653315 (-)
G256929 NA non-coding downstream 585205 18348843 ~ 18349692 (-)
G256689 NA non-coding downstream 1143990 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 1200848 17733806 ~ 17734049 (-)
G257471 NA non-coding upstream 3091 18939482 ~ 18939782 (-)
LOC117599228 NA non-coding upstream 181458 19117849 ~ 19119020 (-)
LOC113530339 r3hdml non-coding upstream 221900 19158291 ~ 19178092 (-)
G257518 NA non-coding upstream 252286 19188677 ~ 19231641 (-)
G257595 NA non-coding upstream 460551 19396942 ~ 19397151 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 403645 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 634210 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 1021620 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 2063733 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 2096248 16787801 ~ 16838649 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 186 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 434296 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 495059 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 546702 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 1164608 20100999 ~ 20109212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G17326 NA non-coding CI01000001 null 9213456 ~ 9273959 (+)