LOC117599228


Basic Information

Item Value
gene id LOC117599228
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19117849 ~ 19119020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304768
tcaaaacaaacttgaaaaaaagaaacttgtCTGACTGCAGTTTGGGACCAACAGCTGTTTGCTTTCAAACAGTAAGCAAGCTAAATCTGACAATCTCAATTTTTGTAAactaagaaaacaaacagacaaaataacaCTATATTTTTGATGTCAAGACATTTGTATTTCACAAAACATTTCTGAGGAAATGTGCCAGAAagatttttattacaaaatagcCTAATTGCATTTGGCTCCTGTTTCTGCAAAGGTCTTATTTACAGCAGTTATGACTTCAgtctggttttctttttttaggagGGTTCGTTCAGCCGAGGCTCCTCATGGATAGCCAAGAAACACTTTCTGATGGTTATTTTTGCTGCAGGATGGGACGAGCGGCAGCATGGCAAATCAGATCAGGATGATTTATCTATAGAGAGGTCAGTGTAGGGCGACTCGACCTGTAAATAGAACCAGCAGTATAGCATCCTCCTGTTTTATATCAACCCCAGAGGATATTCGCCTCTCTTTATGTAAGTGTATTATATTTAGATACTTGCAGCCGTTTCTAGTTTTGTCTCCACTATATTTGCAATTATTGTACATACCGTATCTACACAGATTATCTGAAg
>XR_004579694.1
tttttaattgagctTGATACCTCAGATTGGACAGTGGAGTGAGAAACAGACATGGAAGTGGTGCATTCACACTTCTTCAGCCTGCTTGAATTTTTAGGGATGCCTACATGGGACCCTGCGAAGCCCAAgtgtttttctcttaataaTTCACTCGTGTTCCCCCCTACAACATTCATCGACTACCTGGCATGCTTTTGCTTTTTGCTTAGAATTTCTCTGCAGCATGATTTCTATCCGAGTTTTTTTCCTGCCTGTGCCATCTACGAGGAACTTGTAAAAGTATGCTCCATCAACTGTtgtgggttttttatttttgttttattttattttctatttatttttttttaacgcagCGTTGAGTTAAGAGTTTTCACTTCTTATCTGAAGTCATAATTGTTAATGTCTCAAGGttgtggtggtttttttttttttttttttttttttttttttgggcatcaaaacaaacttgaaaaaaagaaacttgtCTGACTGCAGTTTGGGACCAACAGCTGTTTGCTTTCAAACAgagGGTTCGTTCAGCCGAGGCTCCTCATGGATAGCCAAGAAACACTTTCTGATGGTTATTTTTGCTGCAGGATGGGACGAGCGGCAGCATGGCAAATCAGATCAGGATGATTTATCTATAGAGAGGTCAGTGTAGGGCGACTCGACCTGTAAATAGAACCAGCAGTATAGCATCCTCCTGTTTTATATCAACCCCAGAGGATATTCGCCTCTCTTTATGTAAGTGTATTATATTTAGATACTTGCAGCCGTTTCTAGTTTTGTCTCCACTATATTTGCAATTATTGTACATACCGTATCTACACAGATTATCTGAAgtcatatttaatacattttttgtaccttttattattgttttgtatgTAGATCTGGTCTTTCCAGAAATAAAAAACCTGAGGCTGTGTCCTGGTTTGACTTATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304768 False 614 lncRNA 0.37 1 19117952 19118565
XR_004579694.1 True 946 lncRNA 0.38 2 19117849 19119020

Neighbor

gene id symbol gene type direction distance location
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding downstream 413925 18693407 ~ 18703924 (-)
avpr2aa avpr2,LOC108275493 coding downstream 442637 18657095 ~ 18675212 (-)
LOC117595686 plekhg5,LOC107714916,LOC107697827,LOC107664198 coding downstream 510431 18565524 ~ 18607418 (-)
plekhg5b plekhg5 coding downstream 552322 18540263 ~ 18565527 (-)
irx7 LOC108275649,LOC107751843 coding downstream 616038 18500181 ~ 18501811 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding upstream 11 19119031 ~ 19127613 (-)
trnak-uuu_17 NA coding upstream 9444 19128464 ~ 19128536 (-)
LOC113530333 faim2 coding upstream 11088 19130108 ~ 19142474 (-)
fitm2 fitm2 coding upstream 24717 19143737 ~ 19148012 (-)
ada ada coding upstream 112826 19231846 ~ 19251695 (-)
G257471 NA non-coding downstream 178067 18939482 ~ 18939782 (-)
G257458 NA non-coding downstream 181458 18934897 ~ 18936391 (-)
LOC113530357 NA non-coding downstream 254727 18809063 ~ 18863122 (-)
G257322 NA non-coding downstream 464534 18653093 ~ 18653315 (-)
G256929 NA non-coding downstream 768157 18348843 ~ 18349692 (-)
LOC113530339 r3hdml non-coding upstream 39271 19158291 ~ 19178092 (-)
G257518 NA non-coding upstream 69657 19188677 ~ 19231641 (-)
G257595 NA non-coding upstream 277922 19396942 ~ 19397151 (-)
G257596 NA non-coding upstream 280567 19399587 ~ 19399842 (-)
G257604 NA non-coding upstream 312142 19431162 ~ 19431386 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other downstream 53267 18936577 ~ 19064582 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 586597 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 817162 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 1204572 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 2246685 16852928 ~ 16871164 (-)
LOC113530570 NA other upstream 251667 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 312430 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 364073 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 981979 20100999 ~ 20109212 (-)
LOC113530994 NA other upstream 984754 20103774 ~ 20103911 (-)

Expression


Co-expression Network