G257622 (LOC108276210)



Basic Information


Item Value
gene id G257622
gene name LOC108276210
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19478302 ~ 19478895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU304946
CCTGGGAATGAAACTTGGAGATAGTGGTGGTCTCGATGTCCTTCTTTCCGAGAATCTCCATCTTGACCGGCGTGTTGGGGAAGTTGAAGGCAAAGTAGTCCAGGAAGTCGGGGAGGTAGGCAGCAGCGCCATGGACCACCGAAAGTGCATACCTTGCTGCTCCTTTGGAAATTTCGCTAAAAGCCAGGTCGAGGAACTCGCATGCAAACCTCTCCTTCTCCCCAGGCTGCAAGAGAGAGATTTCATCGGCATACGCGTGCAGAATGGATGCTCCACCATTGGGCTGCACCTCCTCGTGCATGAGCCTGCTAAAACGTGAGCTTGTCTTCAGGCATGAGCTGCGAATAGAGTGGTCCTGATGTGAGAGGAAAGGAAAGACTGGACCCTCGTTTGAGCCAGCGTGACTGAGTTTTTCCTCTTTGATGTTGGCGACGACAGTCTTGTCAGACTCGGTGGACAAAGAGCATTCATCGGTCTGGATCTCCTTGTCAGACGTCCGCAATCGCTTGCTACGCTGCTCGTCTTCCCGGtgcctcttctttttcttcttctttttcagcaGGTACTCCTCCAAGGTCTGAGGCTTTCCATTCT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU304946 True 594 TUCP 0.52 1 19478302 19478895

Neighbor


gene id symbol gene type direction distance location
ptpn22 NA coding upstream 12966 19439436 ~ 19465336 (+)
atp6ap1b LOC108275744 coding upstream 146328 19322799 ~ 19331974 (+)
itih6 itih6 coding upstream 168468 19295519 ~ 19309834 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding upstream 184101 19283497 ~ 19294201 (+)
si:dkey-78k11.9 NA coding upstream 202549 19273287 ~ 19275753 (+)
zgc:158263 LOC108276042,LOC108441406 coding downstream 305676 19784571 ~ 19794997 (+)
zbtb48 zbtb48,LOC102780700 coding downstream 360816 19839711 ~ 19848662 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding downstream 421119 19900014 ~ 19965413 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding downstream 558526 20037421 ~ 20043667 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 641055 20119950 ~ 20127658 (+)
G257608 LOC108276210 non-coding upstream 7384 19466692 ~ 19470918 (+)
G257609 NA non-coding upstream 12075 19465730 ~ 19466227 (+)
G257287 NA non-coding upstream 72781 19403496 ~ 19405521 (+)
G257283 NA non-coding upstream 84399 19393537 ~ 19393903 (+)
G257255 NA non-coding upstream 117251 19357511 ~ 19361051 (+)
G257623 NA non-coding downstream 2215 19481110 ~ 19481575 (+)
G257671 NA non-coding downstream 181743 19660638 ~ 19666585 (+)
G257710 NA non-coding downstream 254456 19733351 ~ 19735213 (+)
G257713 NA non-coding downstream 264590 19743485 ~ 19745946 (+)
G257781 NA non-coding downstream 529057 20007952 ~ 20008154 (+)
pkig NA other upstream 255743 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 543983 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2289925 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2353351 17071136 ~ 17124951 (+)
G256046 NA other upstream 2969922 16508025 ~ 16508380 (+)
si:ch73-206d17.1 LOC108275771 other downstream 146634 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 911914 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1031349 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1424210 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 1749425 21228320 ~ 21238999 (+)

Expression



Co-expression Network