G257803 (kansl2,LOC107716132,LOC107591080)


Basic Information

Item Value
gene id G257803
gene name kansl2,LOC107716132,LOC107591080
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20108390 ~ 20109226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305179
CCCGTCCTTCTTCTCTGGTTTTGGTGCAGCATTGGGACAGCGCTTGCCGTTCTTACTGGAGACATAGCTGCACTGCCTGTATGGAGCGTTTTTGTCTTCCAGGATGTGCTTGATGCAGAAGTCCCAGCCGTCTATGCGAGGCTGAGTGCACGCTCTCTGCGTGAACGCGCACGTCTGGGGCTCGTGGGCGCGCGCGGCCTGCGACGCTCGACCCCTGCTGGACGGCAGCACGTGGATCCGAATCCGGTTCATCCGGGCTACTGTGGGGGGGAAACAAAAAAccgACCAATATTTAACACTACAGTCGCTGACTTCGAAGCTCCGTTACTTACAACGGCAAAGACCACCAATCGAATGCCTGCTTGCTAAGCACTAC
>TU305180
CCCGTCCTTCTTCTCTGGTTTTGGTGCAGCATTGGGACAGCGCTTGCCGTTCTTACTGGAGACATAGCTGCACTGCCTGTATGGAGCGTTTTTGTCTTCCAGGATGTGCTTGATGCAGAAGTCCCAGCCGTCTATGCGAGGCTGAGTGCACGCTCTCTGCGTGAACGCGCACGTCTGGGGCTCGTGGGCGCGCGCGGCCTGCGACGCTCGACCCCTGCTGGACGGCAGCACGTGGATCCGAATCCGGTTCATCCGGGCTACTGTGGGGGGGAAACAAAAAAccgaccaaaaaaaaaaaaacaataaagtatcGTAAAAATGCAGCTCCATTTTAGATACGCGTGCTGCTTAAAACTGCATTCAGCATACAGAAACTGCAACAGAGAATATTAATGCTAATGAAAGCCACAGTTACTTTCCACACAGCCATAACAaactgctaaatatttttaaatagatttttttttttatttagacacTTAAGCGTTACAACAGAgattctgcatttttatttttttggatgtCATCTGACTCGCGCCGATTTCCGCAGAACGTCACCTACAGGTCGGCCATCTTTGAATGGCTACTGAGGTTAGCAAGCGAGCTAACGCTCCGCAAAAAGGGCAAAATACGGTACAGTATTCATAAAATAAGCTACTATTGTTATTATatctaaattaaaacattatgttTTAAAGCCCTGGACCAAGTAACATTAAAAACTCACCAATATTTAACACTACAGTCGCTGACTTCGAAGCTCCGTTACTTACAACGGCAAAGACCACCAATCGAATGCCTGCTTGCTAAGCACTAC

Function

symbol description
kansl2 Predicted to be located in nucleus. Predicted to be part of histone acetyltransferase complex. Is expressed in notochord. Orthologous to human KANSL2 (KAT8 regulatory NSL complex subunit 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305179 False 376 lncRNA 0.57 2 20108390 20109226
TU305180 True 817 lncRNA 0.45 2 20108390 20109226

Neighbor

gene id symbol gene type direction distance location
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding upstream 64723 20037421 ~ 20043667 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding upstream 142977 19900014 ~ 19965413 (+)
zbtb48 zbtb48,LOC102780700 coding upstream 259728 19839711 ~ 19848662 (+)
zgc:158263 LOC108276042,LOC108441406 coding upstream 313393 19784571 ~ 19794997 (+)
ptpn22 NA coding upstream 643054 19439436 ~ 19465336 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 10724 20119950 ~ 20127658 (+)
pmelb LOC108275940 coding downstream 20480 20129706 ~ 20138298 (+)
LOC113530927 tuba1a,Tuba1a,tuba1c,LOC108255233,LOC108275946,LOC107664173,LOC108431527,LOC102311436,LOC105935211 coding downstream 37952 20147178 ~ 20155096 (+)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC108433413,LOC107707014,LOC107697944 coding downstream 74011 20183237 ~ 20198652 (+)
rarga rarg,rarga,LOC107715005,LOC107593976,LOC107697942,LOC107664174,LOC107707012 coding downstream 122862 20232088 ~ 20268787 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 4350 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 8892 20099230 ~ 20099498 (+)
LOC113530699 NA non-coding upstream 38142 20058251 ~ 20070248 (+)
G257813 NA non-coding upstream 42382 20065477 ~ 20066008 (+)
G257774 NA non-coding upstream 98286 20008639 ~ 20010104 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding downstream 260769 20369995 ~ 20386813 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding downstream 458564 20567790 ~ 20576789 (+)
G258162 NA non-coding downstream 502315 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 554456 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 573144 20682370 ~ 20756538 (+)
si:ch73-206d17.1 LOC108275771 other upstream 403327 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 629495 19478302 ~ 19478895 (+)
pkig NA other upstream 885831 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1174071 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2920013 17175701 ~ 17188377 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 281583 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 401018 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 793879 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 1119094 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1428819 21538045 ~ 21542427 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G131446 NA non-coding NC_053124.1 CM020921.1 5310849 ~ 5311135 (+)
mexican tetra (Astyanax mexicanus) G130864 kansl2,LOC107591080,LOC107737532,LOC107716132,LOC107687436,LOC107593923 non-coding NC_035911.1 CM008314.1 9878308 ~ 9879577 (+)