G258189 (hnrnpa1,LOC108275986,LOC108275985,LOC107707002,LOC107697928,LOC107598948)


Basic Information

Item Value
gene id G258189
gene name hnrnpa1,LOC108275986,LOC108275985,LOC107707002,LOC107697928,LOC107598948
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20511166 ~ 20516713 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305681
GAGACACTTACTAACGATACGATCCACAGCATCATGATCGTCGAACGTAACAAACGCAAAGCCTCTTTTGTTGCCAGTCTTATGATCGATCATTATTTCAATTGCTTCGATCTTTCCAAATTCCTGGAAGTAGTCTCGTAGGTGGCTCTCTTCTGTATCCTCCTTAATGCCACCCACAAAGATCTTTTTCACTGTGGTGTGTGCAAAAGGTTTGTTGGAATCCTCTCTAGACACAGCACGTTTGGGCTCTACAAGACGACCATCGACTTTGTGAGGACGTGCCTGCATGGCGGCATCGACTTCGTCCACACAGGAGTATGTGACAAAACCGAAGCCTCTGGAGCGCTTGGAGTTCGGGTCTCTCATAACcttgagggaaaaaagaaaggaaaaaaaaaaaac

Function

symbol description
hnrnpa1 Enables identical protein binding activity; nucleic acid binding activity; and protein domain specific binding activity. Involved in several processes, including cellular response to sodium arsenite; nucleocytoplasmic transport; and regulation of telomere maintenance via telomerase. Located in cytoplasm and nucleoplasm. Part of catalytic step 2 spliceosome. Implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Biomarker of Alzheimer's disease; hepatocellular carcinoma; and lung non-small cell carcinoma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305681 True 402 lncRNA 0.46 3 20511166 20516713

Neighbor

gene id symbol gene type direction distance location
cbx5 cbx5,LOC103047453,LOC107714996,LOC107664188 coding downstream 1458 20499278 ~ 20509708 (-)
calcoco1a LOC108275893 coding downstream 223953 20274622 ~ 20287213 (-)
nr1d4a LOC108276259,LOC108433411 coding downstream 289053 20205272 ~ 20222113 (-)
mfsd5 mfsd5,LOC107664134,LOC107594050,LOC107599659,LOC107599644 coding downstream 309421 20198866 ~ 20201745 (-)
jph2 jph2,LOC108275945,LOC104967021 coding downstream 331476 20155949 ~ 20179690 (-)
znf740b znf740,LOC107714993,LOC107664257,LOC107599665,LOC107706997 coding upstream 40891 20557604 ~ 20566597 (-)
csad csad,LOC107599458,LOC107706996,LOC107697858 coding upstream 51076 20567789 ~ 20577934 (-)
zgc:174906 NA coding upstream 63894 20580607 ~ 20586424 (-)
spryd3 spryd3,LOC107714925,LOC107664113 coding upstream 96955 20613668 ~ 20658178 (-)
LOC113530420 zbtb39 coding upstream 175093 20691806 ~ 20698192 (-)
G258232 NA non-coding downstream 23756 20470193 ~ 20487410 (-)
G258198 hoxc5,hoxc6,hoxc6aa,LOC102238163,LOC107593966 non-coding downstream 108906 20376338 ~ 20402260 (-)
LOC117599243 NA non-coding downstream 137986 20364055 ~ 20373180 (-)
LOC113530344 NA non-coding downstream 179555 20314362 ~ 20331611 (-)
G258003 NA non-coding downstream 366917 20144025 ~ 20144249 (-)
G258242 NA non-coding upstream 5839 20522552 ~ 20523645 (-)
G258258 NA non-coding upstream 73045 20589758 ~ 20593161 (-)
G258268 NA non-coding upstream 93598 20610311 ~ 20611059 (-)
G258411 NA non-coding upstream 259436 20776149 ~ 20776709 (-)
G258424 NA non-coding upstream 367086 20883799 ~ 20884095 (-)
G258077 rarg other downstream 239259 20252170 ~ 20271907 (-)
mlh3 mlh3 other downstream 391217 20109782 ~ 20119949 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other downstream 401954 20100999 ~ 20109212 (-)
LOC113530994 NA other downstream 407255 20103774 ~ 20103911 (-)
magi3a magi3,LOC108275952 other downstream 889553 19483093 ~ 19621613 (-)
nfe2 nfe2 other upstream 1712 20518425 ~ 20525464 (-)
LOC117599256 LOC103359731 other upstream 312675 20829388 ~ 20868004 (-)
camk2n1b camk2n1,LOC107664141 other upstream 456684 20973397 ~ 20976330 (-)
G258580 map7 other upstream 652273 21168986 ~ 21169698 (-)
trnaq-uug_7 NA other upstream 837726 21354439 ~ 21354697 (-)

Expression


Co-expression Network