G258232


Basic Information

Item Value
gene id G258232
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20470193 ~ 20487410 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305741
CGACTATCTGGCTCGTGTCACACTTTCTTAGAGACCCCACAGATGAGGCCTAATGTTTTCTTTAGCCAAGCAAATGGCCTTGTGGTCAAATCTCAGTAGAGCTGAATCTTTCTGGCTTTGTTATTGTGTGGTAATGCAGCAGGTTCAAGGACTAatgATATGATGGATTGGGTTATCAGTGTCCCACAGAAGCATGAGTGCCTGTCAGGTGCCTTTTGATGTTCGACAGCTCAAATCTCCTTCGCCGTGCTTT

Function

GO:

id name namespace
GO:0042383 sarcolemma cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305741 True 253 lncRNA 0.46 2 20470193 20487410

Neighbor

gene id symbol gene type direction distance location
calcoco1a LOC108275893 coding downstream 182980 20274622 ~ 20287213 (-)
nr1d4a LOC108276259,LOC108433411 coding downstream 248080 20205272 ~ 20222113 (-)
mfsd5 mfsd5,LOC107664134,LOC107594050,LOC107599659,LOC107599644 coding downstream 268448 20198866 ~ 20201745 (-)
jph2 jph2,LOC108275945,LOC104967021 coding downstream 290503 20155949 ~ 20179690 (-)
tuba1c tuba1c,LOC108255233,LOC103148207,LOC108275946,LOC107707017,LOC102311436 coding downstream 328138 20138780 ~ 20142055 (-)
cbx5 cbx5,LOC103047453,LOC107714996,LOC107664188 coding upstream 11868 20499278 ~ 20509708 (-)
znf740b znf740,LOC107714993,LOC107664257,LOC107599665,LOC107706997 coding upstream 70194 20557604 ~ 20566597 (-)
csad csad,LOC107599458,LOC107706996,LOC107697858 coding upstream 80379 20567789 ~ 20577934 (-)
zgc:174906 NA coding upstream 93197 20580607 ~ 20586424 (-)
spryd3 spryd3,LOC107714925,LOC107664113 coding upstream 126258 20613668 ~ 20658178 (-)
G258198 hoxc5,hoxc6,hoxc6aa,LOC102238163,LOC107593966 non-coding downstream 67933 20376338 ~ 20402260 (-)
LOC117599243 NA non-coding downstream 97013 20364055 ~ 20373180 (-)
LOC113530344 NA non-coding downstream 138582 20314362 ~ 20331611 (-)
G258003 NA non-coding downstream 325944 20144025 ~ 20144249 (-)
G257980 NA non-coding downstream 341081 20128905 ~ 20129112 (-)
G258189 hnrnpa1,LOC108275986,LOC108275985,LOC107707002,LOC107697928,LOC107598948 non-coding upstream 23756 20511166 ~ 20516713 (-)
G258242 NA non-coding upstream 35142 20522552 ~ 20523645 (-)
G258258 NA non-coding upstream 102348 20589758 ~ 20593161 (-)
G258268 NA non-coding upstream 122901 20610311 ~ 20611059 (-)
G258411 NA non-coding upstream 288739 20776149 ~ 20776709 (-)
G258077 rarg other downstream 198286 20252170 ~ 20271907 (-)
mlh3 mlh3 other downstream 350244 20109782 ~ 20119949 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other downstream 360981 20100999 ~ 20109212 (-)
LOC113530994 NA other downstream 366282 20103774 ~ 20103911 (-)
magi3a magi3,LOC108275952 other downstream 848580 19483093 ~ 19621613 (-)
nfe2 nfe2 other upstream 31015 20518425 ~ 20525464 (-)
LOC117599256 LOC103359731 other upstream 341978 20829388 ~ 20868004 (-)
camk2n1b camk2n1,LOC107664141 other upstream 485987 20973397 ~ 20976330 (-)
G258580 map7 other upstream 681576 21168986 ~ 21169698 (-)
trnaq-uug_7 NA other upstream 867029 21354439 ~ 21354697 (-)

Expression


Co-expression Network