G258273


Basic Information

Item Value
gene id G258273
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20663682 ~ 20680938 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305792
caaaaaaaaaaaaaaaAAAAAACACGACATGACTGTCCTTAACAATGGATGGAAAAATGCAGGAAGAGACAGGGGAGAAAAAGTGAGGACCCCACTGCATCGCTTAAAATGCTGACGAGCCGCTGCTCGAGGCTGGAACAGAGCAAGGCAGGCGATTAAATCTGGAAATGGTGGGAAGCAGAGCCAACACAAACCTCAACCCAAAACAACAAGATGTAAGGAGCCATTAAATCTTCAGTCACGCTGAAAGACGGCACGCAGAAGCATTTTTGTGTGATATTTTCACCTCTGATGATGAGGCAGTGAGTTGAAATGAAATTCAATTCGAGGGCATTCTTGTTaagtaaggattaaaacacttggaggtgtgctgttataagaaaataatcaacgacactggcgtgatgtggcctgacatgaagcagcgttactgttaccaccccaaagttgattattttcccatagcaCCATGCCCCGAACTGTttctttcctcttataccacagcaatttgccaacgattacaatttgtatttaatattgaatgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305792 True 546 lncRNA 0.42 2 20663682 20680938

Neighbor

gene id symbol gene type direction distance location
lima1a LOC108275931 coding upstream 52969 20586167 ~ 20610713 (+)
copz1 copz1,LOC107664248 coding upstream 118885 20537706 ~ 20544797 (+)
hoxc1a NA coding upstream 216700 20439254 ~ 20446982 (+)
hoxc4a hoxc4,hoxc4a,LOC108433407,LOC103034018,LOC107714997,LOC107598886,LOC107664204 coding upstream 249821 20411373 ~ 20413861 (+)
hoxc5a hoxc5 coding upstream 261139 20399696 ~ 20402543 (+)
LOC113530755 gpr182,LOC108275868 coding downstream 3427 20684365 ~ 20686778 (+)
LOC113530407 gpr182,LOC108275868 coding downstream 8248 20689186 ~ 20691614 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding downstream 38927 20719865 ~ 20729933 (+)
march9 march9,LOC107593952,LOC107599679 coding downstream 56806 20737744 ~ 20751871 (+)
LOC113530777 LOC108276216 coding downstream 202754 20883692 ~ 20886509 (+)
G258162 NA non-coding upstream 6615 20611541 ~ 20657067 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding upstream 86893 20567790 ~ 20576789 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 276869 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 554456 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 559642 20101008 ~ 20104040 (+)
G258275 LOC108276173 non-coding downstream 1432 20682370 ~ 20756538 (+)
LOC117599265 NA non-coding downstream 16047 20696985 ~ 20699668 (+)
LOC117599266 NA non-coding downstream 27177 20708115 ~ 20711958 (+)
G258362 NA non-coding downstream 105304 20786242 ~ 20790145 (+)
LOC117599282 NA non-coding downstream 227878 20908816 ~ 20911082 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 149487 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 264968 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 958619 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1184787 19478302 ~ 19478895 (+)
pkig NA other upstream 1441123 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 222167 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 547382 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 857107 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1990460 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2690806 23371744 ~ 23383653 (+)

Expression


Co-expression Network