G258362


Basic Information

Item Value
gene id G258362
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20786242 ~ 20790145 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305900
CGTATAAATAGATGCAGTATTAGTGAGTCTAAAGTgaataaagactgaaaaaaaaggcatgaaGCAGAAGAAAAGGTTAGTAGGTCACTCACatctttcctttattttcagtgtattttttaatCAGGAAAAAGGACAGAGAAAGCAGAGTGAGAACAGAACATGTAGCAGTGGTTTAGTTCACAGATGAAAGTGAATTTTTAATACAAGAGTCAAACAAGTTATTTTACAGGATTGTAGTAAGACAGGAGAAGAGTGCCGACGGAGTCTGACAGCAAGCAGAAGAGTTAATAATTCATATCTACAGCAGAAAGTTTAATACAGCCCCGTTCATACTGTACTTGAATGTTATTTTTTCTCTACATTTCTTTCCAGgcttaaattaaatgaatacaaatccTTCCCTTGTCTCCTCACAGGCAAGTgagcacaatttatttgttttaaataaaagtgctaCAAATGTTCACTTgccagagagacaaacacatgTTTACCATCCTTCTTTGAAAAGAAGCTACACTGAAAGAGAAACTCTCAAAATCCCAGTTCTGATGACGGAAAACACGATGTAATGGTCTAAACCAGGGGTGTCAAAAATTAGCTTTAGCTAACAGgccacattacattacactcaGTCCAGTGTCAAAtgggctagaaaaaaaaattagttaatTTCTCTATTTTTCCCCCTAGTGGAATACAAGAaagctcttttttctcttttttacaaATCTTCAATTCAATTATGGTCCACAAGctgattttaattcatttggTTGGCCATATTAAAAAGTTTATAAAGCTGATTCTGGATATATTTTTGACACCCCTGCTCTAAACTGAAGAAATTCTTTATCAGGAGTTACAGATTTGGTATAAAGACTGGGAGAGCATGTTTTTCTCCAGATAACTTTACAGATAGAAATGTGTCTGTGGTCTTTGATTGACTGAAAACTTTGATTAAAGGGCCAGAGCTATGGATTCTTATGAATGTACAAATTCTGGTTAtctgagtttggtgaaaaactaaagaagaaaCAATAACACGGTATATATAAAAGGGAAAAACTGGTCTGAACTGCTTCCAGCCCTGAGGTGATTACATAACCACCATGTGAACTATAAAGGCATTATGAAATGCATGGAGCTTCATAATCTGATGTTGTGTGTCCTGCTTCCTGTCTTGTGATATGCTCGGGACATTTCTGTCCTGCATATGcaaaattagaataaaattaaaataaaataaaaaattttactGCAATTACACAAGTTTTAGGTAAATAAATACCACGAATTTCGGATGCCAAGTTACAGTgtgtaaagtttaaaaagtgttcctgGACTGgtaataatcatataatgttAAAGATGTTTCAGAAAACTGtaaactgaaatatttccatGCAATAGATTTGTACTGTAAAGATtacaaactgctgctttaataGACACTCCAGACGTTTTCAGTTCAAATACCACAGACTTGAAAGGTTTAACCTTGCGTAGGTAAACAAATATTCATATACATACAATCAAATACAGTAGAAATTAAAGCAAAGGGGCGACAGTAACCCATGCAATACAgagcatataaataaataaataaataaaccaaaaaaaatcagattctGATCATTTTACATCCGAGTACCAGAGAAATGCAtctaaaacatacagtacatgaagGTACACTAGATACAGTTCTAAATTTTTATCCCATGTCATATTTGGCTAATTGTCTGTCTAGTTATGGGTTGTGGATGTTTTTCGCTATGAAGTGCATTTAGCAGGTCAGTGAAAGTTTGGGTGAAAGTTTGCTGCTTTGACATCTAATGACAAAGTATAccgagtttaaaaaaatactatctTCACTGTttcaataaaacaatacaaaaaatactgaTTATCTCAATTTAAATCATCATTGCACCATCGCTCTGGGCAGCAGGTGAGAATAAAATCCTACTCGAAgcatccaaaacaaacaacagtttattttttttctacaaaagtGCATAATACTTTCCTTTTAGCGCTACATAATTAACCATTTCCTTCAGGTCTCAACAAAGACGTTTTAGTATTTATGATATATAATACATCACAGTTATTTATATCTGGCCCACATCCCCAAGATTCATGCATTCTCTTGATGCGTGGATATCGAGTCCCTCAAGGCCCAATCCTCGAGTGcatttaaaaacttaaaaacattAGAAAAGCTACCTCAATGCCACAGGCAAATGACGAACAGCTGCCTCGAGTGTCTGAAGGTTCATTCAGTCCAGAAAAGAGACTGAAAATAGGAGACTGTAAAGCCCTGACACACCAAAACACTAACGCCAACCAACAATGTTCGAAGATCACTTTCTCTCGCAGGTGAAAAGCTGTACACGGCAAACACATCTGACGTGTATGTACGTCCTGTGGGAAAGGAAATTACTCTCCATGCCAGTAGACAGcagtaatgtgtgtttgtaataaaagaaaaattacaactacagtttgtaattaaaaaaaaaacccaaaacaaaacagaaaaactcaATATTAAGGAAAAAGGCAGTGTCCCAAATTAAATACTAGTGTACTAAACAATACGTCCAAATAATACAGCATTGGTACCTACAGTGCTGTACtattttattaatctatttaatGTGTTATTACATGGTTTGGAATTAGCCTAGCTACTGTTTTCTCTATTTTGTTGCATCGGAATGATCGTAAAATGAGAAATTTTCACTGTAGAGCAACCTCGGAAGGGAATGTGTTTACGACATCTTAATTATCATGTCATAACTATTTCGCTTGTTACTATTGTTCGATAAATTATCGATTTGCGTGAGGACAAATCCTCGTAAGTGAAGACAAAACGAGCAGCAGTTATTTTTCTGGAGATGAACATGTCTTGAAAATTGTTTGATGAATAACAGCTAGCTAGATTTGCTGTCTTGCAAATTATCCAAGCTAGCTGTGAGGATGCTTCAAAATAGCTAACTCATTTCATTTACAAAGTGAGTTCTGGCgatatacaaacacaaacagctacaaattttatttgtaaacgTACTACTTGGTTGGAATTTTGACTCGCATTGCTCTAGTAAGTAAGAGTAAAAACTCTTAGTGTGAACAGTTCAACAACAGCTACAGCCATCTTAGTGTTTCAGGGCTCTAAAGACTCAGAGACAGAAGGGACGTGTGTTGCCTGGAATAATTTGCACTGTAATTTTGGTCACGCTATCTTTTTTCGAGACAGACCCTTTTTCTTTGCCAGAGATCAGATTATTACATAAAGCAGAGTAGCAGGAAGCAGTTAGAAAGCATCTGATAGTGGCTTAAGCTAAGAAACTGGTCCCATAGTGTTAGTCTTTAGCTTAGGGTTAGACTTCCACTCTATCCAACAGCACCTCATgacataataattatataactgATGTTTTGCTAAatcatgatttgtaatgtatgACACACGGTTAATAAACCCTgatgtattgtgatataatttacGCTGACTGGTGAAAGATATTCATAAATACCAGAGAATCCACAACACCAGCACAAGCTGAACCCTGTTTCCTCTATAAAACATAAACCTGTATTTTGGTCACAGACAAAATGAGAGTCCTTCAATTCCCAGGAGCTGATCACGACTTTTAAAGCCTGTTGTGTTTGCGTCCTTCTTTGACTGTTTATATAACACAGCGTTTCTCACTCGTTCATCGTTTTTCGCTTTTCATGTGTTTAAGCCGTACACAAGATTTTTAAATCCCCGCTGCTTTTCTCTGGTTTTCTTATTGGAAAACTTGGAAACCTCCCAAACTTTATATTTAGAGGCCAGATTTTTGCTGATGTCTCAGTAGTGTGGGGTTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305900 True 3884 lncRNA 0.35 2 20786242 20790145

Neighbor

gene id symbol gene type direction distance location
march9 march9,LOC107593952,LOC107599679 coding upstream 34371 20737744 ~ 20751871 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 56309 20719865 ~ 20729933 (+)
LOC113530407 gpr182,LOC108275868 coding upstream 94628 20689186 ~ 20691614 (+)
LOC113530755 gpr182,LOC108275868 coding upstream 99464 20684365 ~ 20686778 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 106172 20668113 ~ 20680070 (+)
LOC113530777 LOC108276216 coding downstream 93547 20883692 ~ 20886509 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 109977 20900122 ~ 20902771 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 128943 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 207524 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 262525 21052670 ~ 21056506 (+)
G258275 LOC108276173 non-coding upstream 29704 20682370 ~ 20756538 (+)
LOC117599266 NA non-coding upstream 74284 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 86574 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 105304 20663682 ~ 20680938 (+)
G258162 NA non-coding upstream 129175 20611541 ~ 20657067 (+)
LOC117599282 NA non-coding downstream 118671 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 185753 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 295237 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 303184 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 313569 21103714 ~ 21105101 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 272047 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 387528 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1081179 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1307347 19478302 ~ 19478895 (+)
pkig NA other upstream 1563683 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 112960 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 438175 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 747900 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1881253 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2581599 23371744 ~ 23383653 (+)

Expression


Co-expression Network