G258427 (cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144)


Basic Information

Item Value
gene id G258427
gene name cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20901278 ~ 20902757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305980
ttattttctatttggtTATTTGGTCAAGTAAGATGTTTCAACTTTACATACagaacaaacatttacacatgaaTAATGGTGTAGAATGAGTGATGTATCATTTACGAGTGAGTCAACtctTTTAGGTGAATGTTGAGAGCTAACtgccatatatatatgtatataaacagCAGTAACCACTGCTTCCATGGAAACCATTTTTCAAATTgtaatctgtttgtttgtccaaATGATTCGTGTGTTTGCCTCTCAGCTATGTAGCTGTGTGTAGAGGTAAGTTTATTGTAGTTTATTAGGGGATGCAACTGGTTTTCAGGATAAATGGTAATAAATCTTTATAATGGACCATAGACACAACAGGGTACAATACCAATACATGGATTCTTACTgttttcatcagtgtgtttttgtagaATTTAGCTGATTTAGGATTATTCAAATGGGTTTAATAGGTAGAGTATAATTTCACTAAACCATTTCAGCCATGGTCtggcaaagaaaaaacaatcacTGCTCATAATATTGGAAATTTTGTCCAGTTCAGAAAAAATGGCAATTATTCATTTGGGAATTGAAAGAGTTGACTCTGATTggtgagctgagtcaaatgatctgattcACTAAAAACTTACTAAAAAGaactaaaatttttaaaaataatgtacattaaGATACACACGGTTAACATTTCAAATATGTAAAACATACTGTCTATCATAACTGTGCTGAATATATTTCACAGAATAGTGATTCAGGTACATTCAATATATCCCTTTTAACcaataataaatatgtgattacattcaaatttcttaattttataataataaactgtgatCATATCCCAGTGTATTTGGAAAGTTACAGGAATAGCAGGAATATATACACTACAACACACAGTAATATCAAGTAACCAAGGAATATGTCAAGTAGTGTAGAACCTTCTAGGGTAAGTCGAGCAGCTTGTTTTTTGCATACAGGTCTTCTGTGATCTGATAGACTTCTGagatcagaggtaaagcttctCCCAACAGTGTGATCACCTCCTGATGGCTGCCTGCATTCATCACCTCGAAGAATGCATCACGGCCTGGCAGAGCGCAAAACGCCAATCCAGCTGCTTTCCGGATGATCCACGAGTGGTGCTGCGCCAGTGACGCATTATAGGCCTCGGAGCACATGACGGAGGTCTTACTGTCCTCAGTGCTGGTGCGCAGACTCTCCAAGAAGAGCTGCAGCCAGCGCAGGGCACGGTGGAGACGCAGTAATGTGCGGCAGCCCGACTCCGGATGGCTCCCTCGTTTGGTAAGATCCACCAGCTCATTGTCCAGCTCATACTTCACCATGGACTGGACGGTGAGGTAGTGCGTCCCATTCTCACCCATCAGAAAGTTCTCCAGGATTTGGATTTTGCTGACTGCATCCTtggagatgaaggagaagacGCTTCCCAGGC

Function

symbol description
cptp Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in several processes, including lipid transport; negative regulation of NLRP3 inflammasome complex assembly; and negative regulation of interleukin-1 beta production. Predicted to act upstream of or within lipid transport. Predicted to be located in Golgi apparatus; bounding membrane of organelle; and plasma membrane. Predicted to be active in cytosol and membrane. Orthologous to human CPTP (ceramide-1-phosphate transfer protein).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305980 True 1456 lncRNA 0.39 2 20901278 20902757

Neighbor

gene id symbol gene type direction distance location
ints11 cpsf3l coding downstream 1367 20886166 ~ 20899911 (-)
acap3a acap3,cenb5,LOC107664201,LOC107706985,LOC107697914,LOC108276441,LOC107714984 coding downstream 88754 20783966 ~ 20812524 (-)
ube2j2 ube2j2,LOC108276425,LOC108411519,LOC107697915,LOC107706988,LOC107593951,LOC107664234 coding downstream 118518 20776902 ~ 20782760 (-)
hipk1a LOC108276173,LOC108433383 coding downstream 128211 20754662 ~ 20773067 (-)
agap2 LOC108275864,LOC108433387 coding downstream 183258 20699123 ~ 20718020 (-)
zgc:193690 LOC108275535,LOC108433381,LOC105912710,LOC107563149,LOC107664213,LOC107706984 coding upstream 3252 20906009 ~ 20915109 (-)
mul1b mul1 coding upstream 76181 20978938 ~ 20983549 (-)
LOC113530858 LOC108275641,LOC108433355 coding upstream 136634 21039391 ~ 21047873 (-)
dnajc16 dnajc16,LOC108433375,LOC107697907 coding upstream 171456 21074213 ~ 21083989 (-)
selenoi selenoi,si:ch211-197l9.4,LOC107656545,LOC107549067,LOC107571075,LOC107708808 coding upstream 182610 21085367 ~ 21101654 (-)
G258424 NA non-coding downstream 17183 20883799 ~ 20884095 (-)
G258411 NA non-coding downstream 124569 20776149 ~ 20776709 (-)
G258268 NA non-coding downstream 290219 20610311 ~ 20611059 (-)
G258258 NA non-coding downstream 308117 20589758 ~ 20593161 (-)
G258242 NA non-coding downstream 377633 20522552 ~ 20523645 (-)
G258437 NA non-coding upstream 50869 20953626 ~ 20953852 (-)
G258596 NA non-coding upstream 251149 21153906 ~ 21167598 (-)
G258626 NA non-coding upstream 335279 21238036 ~ 21241060 (-)
G258700 NA non-coding upstream 472141 21374898 ~ 21375103 (-)
G258771 NA non-coding upstream 611890 21514647 ~ 21555460 (-)
LOC117599256 LOC103359731 other downstream 33274 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 375814 20518425 ~ 20525464 (-)
G258077 rarg other downstream 629371 20252170 ~ 20271907 (-)
mlh3 mlh3 other downstream 781329 20109782 ~ 20119949 (-)
LOC113530994 NA other downstream 797367 20103774 ~ 20103911 (-)
camk2n1b camk2n1,LOC107664141 other upstream 70640 20973397 ~ 20976330 (-)
G258580 map7 other upstream 266229 21168986 ~ 21169698 (-)
trnaq-uug_7 NA other upstream 451682 21354439 ~ 21354697 (-)
fyco1a LOC108275732 other upstream 1022487 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 1113290 22016047 ~ 22048388 (-)

Expression


Co-expression Network