G258439


Basic Information

Item Value
gene id G258439
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20975898 ~ 20976359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305997
CCTCGTTTGCTCCGTCCAATCTGTCCGAGTTTTGGAGGTCTTTTATTCTGTGTGGAGCTGAAGAAGTTGTTGGTGTTGTGCAGGCGGCAGGTGAGAGACATTTGCTCCTCGTCTCCATCGTTACCGTACCGACTTATGTTTTCCTCGTAAGGCAACACCTGCGACATGACTGCCTCTCTCTCCGTccGCGAGCCTCTTTAGGTGTTTCGGTGTTTCGGCCAGAGCAGGTCCTACAGTCACAGACACCACGTGGTGCACAGATATCACACCAACGTAAAATCTGCTCTCCCGCGCGCGGATTCGCCAGACTACCAGTCCGTCAGCCAATCAAATTCGCTTCGTGAGGATTCCAGCCCA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU305997 True 357 lncRNA 0.54 2 20975898 20976359

Neighbor

gene id symbol gene type direction distance location
vwa5b1 vwa5b1,LOC107599492 coding upstream 21927 20919088 ~ 20953971 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding upstream 73127 20900122 ~ 20902771 (+)
LOC113530777 LOC108276216 coding upstream 89389 20883692 ~ 20886509 (+)
march9 march9,LOC107593952,LOC107599679 coding upstream 224027 20737744 ~ 20751871 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 245965 20719865 ~ 20729933 (+)
fam43b fam43b coding downstream 21310 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 76311 21052670 ~ 21056506 (+)
cdaa cda coding downstream 83417 21059776 ~ 21062377 (+)
pink1 pink1 coding downstream 86736 21063095 ~ 21067217 (+)
agmat agmat,LOC102790280,LOC105912720 coding downstream 91814 21068173 ~ 21073057 (+)
LOC117599282 NA non-coding upstream 64816 20908816 ~ 20911082 (+)
G258362 NA non-coding upstream 185753 20786242 ~ 20790145 (+)
G258275 LOC108276173 non-coding upstream 219360 20682370 ~ 20756538 (+)
LOC117599266 NA non-coding upstream 263940 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 276230 20696985 ~ 20699668 (+)
G258460 NA non-coding downstream 109023 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 116970 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 127355 21103714 ~ 21105101 (+)
G258462 NA non-coding downstream 130988 21107347 ~ 21108015 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding downstream 138691 21115050 ~ 21132053 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 68439 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 461703 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 577184 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1270835 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1497003 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 251961 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 561686 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1695039 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2395385 23371744 ~ 23383653 (+)
G259993 NA other downstream 2411179 23387538 ~ 23389314 (+)

Expression


Co-expression Network