G258476 (selenoi,si:ch211-197l9.4,LOC107549067)


Basic Information

Item Value
gene id G258476
gene name selenoi,si:ch211-197l9.4,LOC107549067
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21093329 ~ 21093844 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306047
TCAGGGAATCAGATCAGGGAATCAGATCAGGGAATCACATCAGGGAATCACAGCAGGGAATCACAGCAGGGAATCACAGCAGGGAATCACAGCAGGGAATCACATCAGGAATTTATAGCAGGGAATCACAGCAGGGAATCACAACAGGGAATCACATCATAACACCCCCGCTGAGTGTAACTATTTAATTTGCAActtagtgtgtatttgtgtgtgtttgctgtagGCGATCATCTCTTACCACTTGGCTGATGTCGTAGCCCCAGGGCAGGAAGAGCACGCCGGTGTTGTATTTCTCCCAGTGTGAGAGGATGAAAGAGAAGAGGACGACCCAGAGCAGGCCATAGAGTGTGAGCACGCTGACTCCGCTCTCACCACGCCCGAACACAGAGTACAAGGAGCTCACGAAGAACACACATGCCCAGCTGTCCAGGCCATGGTCAAACAGCTCGCCCAGAGGAGTGCTGGAGTTCGTCCTGCGAGCCTGCTT

Function

symbol description
selenoi Predicted to enable ethanolaminephosphotransferase activity. Predicted to be involved in phosphatidylethanolamine biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human SELENOI (selenoprotein I).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306047 True 490 lncRNA 0.52 2 21093329 21093844

Neighbor

gene id symbol gene type direction distance location
agmat agmat,LOC102790280,LOC105912720 coding upstream 20272 21068173 ~ 21073057 (+)
pink1 pink1 coding upstream 26112 21063095 ~ 21067217 (+)
cdaa cda coding upstream 30952 21059776 ~ 21062377 (+)
LOC113530567 LOC108275599 coding upstream 36823 21052670 ~ 21056506 (+)
fam43b fam43b coding upstream 93597 20997669 ~ 20999732 (+)
si:ch73-217b7.1 map7 coding downstream 44381 21138225 ~ 21171926 (+)
LOC113530738 si:ch73-290k24.6,LOC108275467,LOC106608414,LOC107396729,LOC106510918 coding downstream 108646 21202490 ~ 21212264 (+)
egr4 LOC108275472,LOC107734701 coding downstream 131497 21225341 ~ 21227743 (+)
LOC113530257 LOC108275533,LOC108435580,LOC107565311,LOC107570205 coding downstream 148402 21242246 ~ 21257288 (+)
LOC113530283 LOC108276019 coding downstream 181586 21275430 ~ 21287608 (+)
G258460 NA non-coding upstream 5107 21085382 ~ 21088222 (+)
G258439 NA non-coding upstream 116970 20975898 ~ 20976359 (+)
LOC117599282 NA non-coding upstream 182247 20908816 ~ 20911082 (+)
G258362 NA non-coding upstream 303184 20786242 ~ 20790145 (+)
LOC117599266 NA non-coding upstream 381371 20708115 ~ 20711958 (+)
G258483 iyd non-coding downstream 9870 21103714 ~ 21105101 (+)
G258462 NA non-coding downstream 13503 21107347 ~ 21108015 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding downstream 21206 21115050 ~ 21132053 (+)
G258680 NA non-coding downstream 260596 21354440 ~ 21354730 (+)
G258689 NA non-coding downstream 290447 21384291 ~ 21386101 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 185870 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 579134 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 694615 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1388266 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1614434 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 134476 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 444201 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1577554 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2277900 23371744 ~ 23383653 (+)
G259993 NA other downstream 2293694 23387538 ~ 23389314 (+)

Expression


Co-expression Network