G258580 (map7)


Basic Information

Item Value
gene id G258580
gene name map7
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21168986 ~ 21169698 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306159
TGGTGCTGGACTTGGCTTTGTTCCCATGTGCTCAGGTCATGTGTGCTTCCGTTCTCTCTGAAAGCCAGCAGCGGCGTCTTCCTCCTCTCGTCCTCTTCCTCTCCGTCTCCCTCCTGACGGGACAGCTTGGTCACCATGGGCACCTCGATCACTTCCTCAAAGGCCGGGGTCTCCATGACGACGCCGTTTTCTTGAAGCTGGGCTTCGGTGCTTATTTTgtgtccagcagggggcagtgtgTGTACGTTGAGGTCAGGGTTAGTGTGTCCATTGCTGTCACTGTGCCGTGTGGCGTGAGGATTTTGTGGAGCTGATACAGTGATTGAGGGGATCCCAGG

Function

symbol description
map7 Predicted to enable signaling receptor binding activity. Predicted to be involved in microtubule cytoskeleton organization; protein localization to plasma membrane; and response to osmotic stress. Predicted to act upstream of or within several processes, including gamete generation; male gonad development; and response to retinoic acid. Located in cytosol and microtubule cytoskeleton.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306159 True 338 TUCP 0.57 2 21168986 21169698

Neighbor

gene id symbol gene type direction distance location
ppp1r14c ppp1r14c,LOC107697847,LOC107738512,LOC107664259 coding downstream 36915 21114967 ~ 21132071 (-)
iyd iyd coding downstream 61060 21101697 ~ 21107926 (-)
selenoi selenoi,si:ch211-197l9.4,LOC107656545,LOC107549067,LOC107571075,LOC107708808 coding downstream 67332 21085367 ~ 21101654 (-)
dnajc16 dnajc16,LOC108433375,LOC107697907 coding downstream 84997 21074213 ~ 21083989 (-)
LOC113530858 LOC108275641,LOC108433355 coding downstream 121113 21039391 ~ 21047873 (-)
LOC117599250 NA coding upstream 6846 21176544 ~ 21179055 (-)
LOC113530508 NA coding upstream 11349 21181047 ~ 21184109 (-)
LOC113530510 NA coding upstream 19683 21189381 ~ 21191028 (-)
LOC113530739 LOC108275468 coding upstream 43215 21212913 ~ 21218913 (-)
wu:fy63c09 NA coding upstream 89835 21259533 ~ 21273011 (-)
G258596 NA non-coding downstream 1388 21153906 ~ 21167598 (-)
G258437 NA non-coding downstream 215134 20953626 ~ 20953852 (-)
G258427 cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144 non-coding downstream 266229 20901278 ~ 20902757 (-)
G258424 NA non-coding downstream 284891 20883799 ~ 20884095 (-)
G258411 NA non-coding downstream 392277 20776149 ~ 20776709 (-)
G258626 NA non-coding upstream 68338 21238036 ~ 21241060 (-)
G258700 NA non-coding upstream 205200 21374898 ~ 21375103 (-)
G258771 NA non-coding upstream 344949 21514647 ~ 21555460 (-)
LOC117599221 NA non-coding upstream 414017 21583715 ~ 21586639 (-)
LOC113530427 NA non-coding upstream 418731 21588429 ~ 21599129 (-)
camk2n1b camk2n1,LOC107664141 other downstream 192656 20973397 ~ 20976330 (-)
LOC117599256 LOC103359731 other downstream 300982 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 643522 20518425 ~ 20525464 (-)
G258077 rarg other downstream 897079 20252170 ~ 20271907 (-)
mlh3 mlh3 other downstream 1049037 20109782 ~ 20119949 (-)
trnaq-uug_7 NA other upstream 184741 21354439 ~ 21354697 (-)
fyco1a LOC108275732 other upstream 755546 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 846349 22016047 ~ 22048388 (-)
G259306 LOC108275814,LOC108411446 other upstream 1276332 22446030 ~ 22449427 (-)
si:ch73-217n20.1 NA other upstream 1791880 22961578 ~ 22980986 (-)

Expression


Co-expression Network