G258700


Basic Information

Item Value
gene id G258700
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21374898 ~ 21375103 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306289
GCCATTGTCTATCTTTATCACTGAATGTGTTTGATGAGTGGAAAGCGCTGGAGGGAAATTAGCACAGGCACCATGCCGTGATTCTCCGCCACCGCCACAGATAAAGTGACATtacataaaagaaataaatagacTGTAAGGTACAGAAAGTGTTCTTTAAAAACTGTTAGGAGCACACTGACCTTACTGCGTCGCACCACCTACAC

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU306289 True 206 lncRNA 0.44 1 21374898 21375103

Neighbor

gene id symbol gene type direction distance location
ednrab LOC108276021 coding downstream 70270 21297056 ~ 21304628 (-)
LOC113530756 LOC108276020,LOC108435576,LOC107101953 coding downstream 80125 21287614 ~ 21294773 (-)
wu:fy63c09 NA coding downstream 101887 21259533 ~ 21273011 (-)
LOC113530739 LOC108275468 coding downstream 155985 21212913 ~ 21218913 (-)
LOC113530510 NA coding downstream 183870 21189381 ~ 21191028 (-)
LOC117599258 NA coding upstream 97615 21472718 ~ 21474842 (-)
LOC117599277 NA coding upstream 119313 21494416 ~ 21496055 (-)
LOC113530264 scml2,LOC108275918,LOC107694433,LOC107752426,LOC107564407 coding upstream 253029 21628132 ~ 21671352 (-)
ftr92 NA coding upstream 454162 21829265 ~ 21835197 (-)
gpsm2l LOC108275742,LOC108435558,LOC107754905,LOC107697895 coding upstream 483109 21858212 ~ 21883246 (-)
G258626 NA non-coding downstream 133838 21238036 ~ 21241060 (-)
G258596 NA non-coding downstream 207300 21153906 ~ 21167598 (-)
G258437 NA non-coding downstream 421046 20953626 ~ 20953852 (-)
G258427 cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144 non-coding downstream 472141 20901278 ~ 20902757 (-)
G258424 NA non-coding downstream 490803 20883799 ~ 20884095 (-)
G258771 NA non-coding upstream 139544 21514647 ~ 21555460 (-)
LOC117599221 NA non-coding upstream 208612 21583715 ~ 21586639 (-)
LOC113530427 NA non-coding upstream 213326 21588429 ~ 21599129 (-)
G258940 NA non-coding upstream 374688 21749791 ~ 21750001 (-)
G258942 NA non-coding upstream 376302 21751405 ~ 21752452 (-)
trnaq-uug_7 NA other downstream 20201 21354439 ~ 21354697 (-)
G258580 map7 other downstream 205200 21168986 ~ 21169698 (-)
camk2n1b camk2n1,LOC107664141 other downstream 398568 20973397 ~ 20976330 (-)
LOC117599256 LOC103359731 other downstream 506894 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 849434 20518425 ~ 20525464 (-)
fyco1a LOC108275732 other upstream 550141 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 640944 22016047 ~ 22048388 (-)
G259306 LOC108275814,LOC108411446 other upstream 1070927 22446030 ~ 22449427 (-)
si:ch73-217n20.1 NA other upstream 1586475 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 1817154 23192257 ~ 23240347 (-)

Expression


Co-expression Network