LOC117599233


Basic Information

Item Value
gene id LOC117599233
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21538045 ~ 21542427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306357
ACGGAACCATATACACTTTCTCAGACATGTTTAGGTGCTCACATCTGGACTGAAGAGAAGAGGAGTACACTTGCTCAGTGAGGATGATTTGGAAAACAGCTTTGAACTACGCCCGATTCTGGCTCGTCCTGGCTTTAGTGTCCGGCCAGCTCACTGCAGAACAGAAGGAGCAGATCTTGGATTTGCATAACCGGTACCGCTCTATGGTCAGTCCTGAGGCTGCCAATATGCTACACATGAGATGGGATGAAGGGCTAAGTCTGGTGGCTCAACATTATGCTGCTCAGTGCATTTGGGAGCACAACTACGATGTGTTAAACCAGCTGGGAGAAAACCTCTTCCTCACCACCGGTCTTCTAAGCATCAACAAATCCATTGCTAGATGGTTTGAGGAACGCAAATATTACAACTATGCTAACAACACATGCAGCTTAGTTATGTGTGGACattacacacaggtgagtgGT
>XM_034311713.1
CCGATAGGGAAGAAGATTCATGGAGCAGATGTCAGTGGCTAACAACTGACAACTGGGAGGCAGCCAAGCGTACATGTGTGAGCTgacttgtgtatgtgtgtgaagaaaaTATGTAATCTGACCTTGTGAGGGTTGAGCAAGTGTAACATGGGTGGGAGTTACAGTCAAAGGAGTTGAgaacctcctctctctctctgctacaCACTCTCACGGAACCATATACACTTTCTCAGACATGTTTAGGTGCTCACATCTGGACTGAAGAGAAGAGGAGTACACTTGCTCAGTGAGGATGATTTGGAAAACAGCTTTGAACTACGCCCGATTCTGGCTCGTCCTGGCTTTAGTGTCCGGCCAGCTCACTGCAGAACAGAAGGAGCAGATCTTGGATTTGCATAACCGGTACCGCTCTATGGTCAGTCCTGAGGCTGCCAATATGCTACACATGAGATGGGATGAAGGGCTAAGTCTGGTGGCTCAACATTATGCTGCTCAGTGCATTTGGGAGCACAACTACGATGTGTTAAACCAGCTGGGAGAAAACCTCTTCCTCACCACCGGTCTTCTAAGCATCAACAAATCCATTGCTAGATGGTTTGAGGAACGCAAATATTACAACTATGCTAACAACACATGCAGCTTAGTTATGTGTGGACattacacacaggtgagtgGTAAAGTGAGTCCTGAGGGGATTTTCGTATcgttatatactgtacatatagtatgtatgtgtgtgtgtgtgtgtgtgtgtattttataataGAACAATTACAGATTtagttaaaaatacaaatacccCCAAATTCCATTAgaactttaacacacacttaatGGGCCTCATTGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306357 False 467 TUCP 0.47 3 21538254 21542254
XM_034311713.1 True 849 mRNA 0.44 3 21538045 21542427

Neighbor

gene id symbol gene type direction distance location
LOC117599284 NA coding upstream 2679 21521346 ~ 21535366 (+)
LOC113530406 LOC108276167,LOC105022368 coding upstream 82197 21452268 ~ 21455848 (+)
vdra vdr,vdra,LOC103045919,LOC108435544,LOC107701250,LOC107702164,LOC107565314 coding upstream 100182 21378129 ~ 21437863 (+)
calcrl2 LOC108276023 coding upstream 186029 21323924 ~ 21352016 (+)
ttc29 ttc29 coding upstream 214822 21315381 ~ 21323223 (+)
zmp:0000001174 rai2,LOC107653213,LOC107550168,LOC107752425 coding downstream 69376 21611803 ~ 21626745 (+)
LOC113530651 cdkl5,LOC108276197 coding downstream 131910 21674337 ~ 21748403 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding downstream 212420 21754847 ~ 21795371 (+)
syap1 syap1 coding downstream 257397 21799824 ~ 21806660 (+)
fbxl5 fbxl5,LOC101481374 coding downstream 265887 21808314 ~ 21828623 (+)
G258758 NA non-coding upstream 27051 21499978 ~ 21510994 (+)
G258689 NA non-coding upstream 151944 21384291 ~ 21386101 (+)
G258680 NA non-coding upstream 183315 21354440 ~ 21354730 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding upstream 405992 21115050 ~ 21132053 (+)
G258462 NA non-coding upstream 430030 21107347 ~ 21108015 (+)
LOC113530300 NA non-coding downstream 58195 21600622 ~ 21602468 (+)
G258883 NA non-coding downstream 207584 21750011 ~ 21752454 (+)
LOC117599289 NA non-coding downstream 427951 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 463903 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 464281 22006708 ~ 22007039 (+)
si:ch73-290k24.5 LOC108275473 other upstream 299046 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 630586 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1023850 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1139331 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1832982 19625529 ~ 19705063 (+)
LOC113530514 LOC108275916 other downstream 1128971 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1829317 23371744 ~ 23383653 (+)
G259993 NA other downstream 1845111 23387538 ~ 23389314 (+)
G260415 NA other downstream 2489800 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2726150 24268577 ~ 24269267 (+)

Expression


Co-expression Network