G259267


Basic Information

Item Value
gene id G259267
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22480557 ~ 22481100 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306924
caaacAGTGCTCCTAGCCCCGCCCCTGAGTACTGTCAAGAtttttttttttttgaaaacattatTCTGGTTCCAAATGTTTTAATACTTTGTGCAGTGGGAAAAACGTACACATCCTTTCTTCTGGGTTTGAAATGAAACCCGGAGTTTAAAATATGTACAGCGTCGTTCCTCCTGCAGAGAGAAATGTCAGCGTCGCTCAGATGCCCTGCTGCAAATACACCAGCGctgtgtgttttacagtgaCAAATAACAGACAGATGAGAGGATAAAGCtcccagagagagagggagagagagagggagagagagattctgtcttcctgtctgtaAAACATGCAGAAGGAAGTGACCTTGCTGATACGGATTAATGCAGATACAAACCCCAACGCAGCGTATCACAAATAACTATGCAGCACAGCAAGTCATAGCAGACAGGATTCATCttgctcatttttattctcttgcCATCCTCCACTTATGcgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306924 True 486 lncRNA 0.43 2 22480557 22481100

Neighbor

gene id symbol gene type direction distance location
trnal-uaa_2 NA coding upstream 168669 22311806 ~ 22311888 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding upstream 171775 22307353 ~ 22308782 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding upstream 203589 22269701 ~ 22276968 (+)
LOC113530350 LOC108275518,LOC108435541 coding upstream 227768 22245495 ~ 22252789 (+)
prdm5 prdm5,LOC102798237 coding upstream 331969 22098753 ~ 22148588 (+)
stxbp3 stxbp3,LOC107565974,LOC107748431,LOC107680060 coding downstream 162427 22643527 ~ 22656044 (+)
rabggta rabggta,LOC107680063 coding downstream 176999 22658099 ~ 22667129 (+)
LOC117595661 NA coding downstream 212140 22693240 ~ 22698904 (+)
LOC113530513 NA coding downstream 228893 22709993 ~ 22716146 (+)
LOC113530788 LOC108275601 coding downstream 240658 22721758 ~ 22735023 (+)
LOC117599300 NA non-coding upstream 249877 22227964 ~ 22230680 (+)
G259131 NA non-coding upstream 329758 22148905 ~ 22150799 (+)
G259078 NA non-coding upstream 391806 22088182 ~ 22088751 (+)
G259097 LOC108276376 non-coding upstream 432188 22047140 ~ 22048369 (+)
G259099 LOC108276376 non-coding upstream 437499 22042779 ~ 22043058 (+)
G259268 NA non-coding downstream 21587 22502687 ~ 22502905 (+)
G259403 NA non-coding downstream 103457 22584557 ~ 22585809 (+)
G259498 NA non-coding downstream 358117 22839217 ~ 22841739 (+)
G259536 NA non-coding downstream 532284 23013384 ~ 23015896 (+)
G259539 NA non-coding downstream 540870 23021970 ~ 23022448 (+)
LOC117599233 NA other upstream 938130 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 1241558 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1573098 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1966362 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 2081843 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 190298 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 890644 23371744 ~ 23383653 (+)
G259993 NA other downstream 906438 23387538 ~ 23389314 (+)
G260415 NA other downstream 1551127 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 1787477 24268577 ~ 24269267 (+)

Expression


Co-expression Network