G259403


Basic Information

Item Value
gene id G259403
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22584557 ~ 22585809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307080
TTGTGTTGAAGGTGAGGGCCTGGCTGGCAGGGCTGGTGCAGTTCCCGTCTGAAGCGATCACGCTGAGTGTGTATGGCTGGCCACAGCGCAGGCGGCTCAGGGTGCAGTTCTCTGTGGTGCTGCTGCAGTTTTGGATGTCGCCATCCACACCATTGGCTGTTAGATAGTAGGACTGAGCGAGGTTAGAGCGTGCCCAGGACACCAACACGCTCTCTGTATCACACAGCGGCCTCACGCTCACTGCCTGAGGAGCACACGGGGCTGCCAAGGAAAAGAGCACCAAGACACAtGTTCTTCTGGAATGTTCCAGCTCTGTCCTTCAGCTCAGGGTTTGATTGTAACAGGCTAAATGCTGCGTATGTGAAAGTGTTCCTATTCTGCGTTCCTGTGGAGGTTATTTACCTGCTGCTTTCTGCACTATTGGACTGCGGGAGCTGTTGCATACTGCGTCTGAGGCCTGCACGCTGAAGTTATACAAGGTCCCGCACTGAAGCCCTGCTATGGTACAGGAAGTGCCTGTGGCGTTGCATTGACGTCTGTCCCCTTGTGCGTTGACGGCCAAGGCGTAATACCACACCGAGCCCTTGCTGGAGGACCAGGAGAGTGTGGTTGAGTTGTTTCCACACGACACATTCAGGCTCAGAGGTGCACATGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307080 True 657 lncRNA 0.55 2 22584557 22585809

Neighbor

gene id symbol gene type direction distance location
utrn LOC108275814 coding upstream 82905 22315172 ~ 22501652 (+)
trnal-uaa_2 NA coding upstream 272669 22311806 ~ 22311888 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding upstream 275775 22307353 ~ 22308782 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding upstream 307589 22269701 ~ 22276968 (+)
LOC113530350 LOC108275518,LOC108435541 coding upstream 331768 22245495 ~ 22252789 (+)
stxbp3 stxbp3,LOC107565974,LOC107748431,LOC107680060 coding downstream 57718 22643527 ~ 22656044 (+)
rabggta rabggta,LOC107680063 coding downstream 72290 22658099 ~ 22667129 (+)
LOC117595661 NA coding downstream 107431 22693240 ~ 22698904 (+)
LOC113530513 NA coding downstream 124184 22709993 ~ 22716146 (+)
LOC113530788 LOC108275601 coding downstream 135949 22721758 ~ 22735023 (+)
G259268 NA non-coding upstream 81652 22502687 ~ 22502905 (+)
G259267 NA non-coding upstream 103457 22480557 ~ 22481100 (+)
LOC117599300 NA non-coding upstream 353877 22227964 ~ 22230680 (+)
G259131 NA non-coding upstream 433758 22148905 ~ 22150799 (+)
G259078 NA non-coding upstream 495806 22088182 ~ 22088751 (+)
G259498 NA non-coding downstream 253408 22839217 ~ 22841739 (+)
G259536 NA non-coding downstream 427575 23013384 ~ 23015896 (+)
G259539 NA non-coding downstream 436161 23021970 ~ 23022448 (+)
G259540 LOC108276061 non-coding downstream 440637 23026446 ~ 23064569 (+)
G259690 ctnnbl1,LOC106942865 non-coding downstream 691625 23277434 ~ 23277909 (+)
LOC117599233 NA other upstream 1042130 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 1345558 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1677098 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2070362 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 2185843 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 85589 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 785935 23371744 ~ 23383653 (+)
G259993 NA other downstream 801729 23387538 ~ 23389314 (+)
G260415 NA other downstream 1446418 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 1682768 24268577 ~ 24269267 (+)

Expression


Co-expression Network