G259811 (LOC100697131,LOC105901900)


Basic Information

Item Value
gene id G259811
gene name LOC100697131,LOC105901900
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23006360 ~ 23010550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307564
GTGGTAAAGAATGATGGGAAGACATCTTGATGGAAAATAACCATTCACATTCACTAACTTTCTGCTTGGTATCTGAGAAATAATTGGTTGGAAATGTACCTAGTGTAAGTCATGCTGGATGATGCCATGAATGGTTACACCATGGTTGTATCACAATGGTATCAGTGTACATCATAAAAAACCTGAAAACTACCTGAGCCATCCTCATCGAAGCAGGTGAAGGCGTTCCTTATGACGTCCTCGGGATCAGTGCCATTGAGTCGCTCTCCAAACATGGTGAGGAACATGGTGAAGTTGATTGGACCTGGAGCCTCGCTCATCATGCCCTCCAAGTACTCATCTGAGGGGTTCTTCCAAGAGAAGCGAGCATGTCGTGAAGATCCTCCTTATCAATGAAGCCATCACGGTTCTGGTCGATCATGTTGAATGCCTCTTTGAACTCTTGGATCTGGGACTGGTCGAACATGGCAAAGACGTTGGAAGTCGCCCTCTGGGGGCGCTTCTTCGTCGTCTTCCCCTTGGCACGCTTGGCAGCAGACATTTTGGCTGAAGAGTTTTGACCTTTAAAGGAAAGTTGTGGTTCATAAATGTCTAGTACACTCTAAAAGATGTTCCTCAAGAGTTTTTTGGATGGTTAAAAGGATTCTAGATACAACCTTAACCGAAAGAATGCCCTCCAATACCCAGTGATGAATCCTACTGAATTCACTGAAGATCTACAGACTAACTGAAGATCGCTTTGGGATGTTTAATAGTGCCTTTTGTTCTAAGATTGCAGGAATAAGTCCAGGGAGCTGGATTCATGTGGATTTTGAATACATTTGCACACATCTGATAAGCTTCTTCAGGTCTATTGTTGTTGAGGATTGGTGCCGATTTACTATCTGGCTGGGTTTGTATGCTTTTGGGTCAAATCTTGCTGTCGCAGACTAAAGAATTCTTTGATTGTGCATAGACCTCAGTGGTCTTGAGCATTGCTACGACACacatctaaaagccaccaatatgAGGATGGCATTGGATGAGGATGGCCAAACTACAAATATGTTAGTGGCGATGGCAATTCATAAGCGAAACATGcgaatggacagaaaaaaaattctcattacACAAAGTTCACGTTGAAGACATTTTGTGTTTACGTAAGCCTGTTTTTTGAGCTGATTTCTGGATCatgctgattgatgacgtaaagagataatcacaggtctatcattagaggattTTCACGGATATGATTCTGACATGGAGAAAGTTATCACGTAGTCTGCTATTGAATTGAGCcgagattttattgggatcatgtTGTACAGTGCAaaaagtaataatcttaaaagacagCTGTAATTGCACAGTCCAAAACTGACTTAAAGGAGGGAAGCATGTACACTAATGCAATCTCCAGTTACTGGAACATTTGCAACATTTTTGTCAGCTGATAACAAGATAACAAAGTCAAGTGGCTTAAAATTCCTTGCTTGTTAATTATTTATCCAGTACTGAACAGCACCAAACCTCAAAAATTGGGAAGTGGAAAGATTAAATAAGAATATCGGATTATTGGATTTGGCTGAATTCCGAAAGGCTCCATATGAAAGATTGGTTTCTACGTCCCACATAATGTGCTCTAACAGGAAGCCACTTGGGATTGAACTTTAGACATTACCAGGAAGGGCTGTAGGAAGGACTagagacattttctgtattgacttggacttgtctcagagTTACTGCCATTTGTACTTGGATTGTCTTGGAATTATTGATGTTTTTGCTTGGACTTGTCTCATACTTTAGCATTGGTCTTACTAAATATGGACTTGGCCTCGTTGTAAAAATAGCATTCATgctgtcttttctttcctcatgcacaaagtttgacaggaagtaattccttcttctgTACGGCGTCGTAATCATTTATGCAATTCACGAGAAAAAGCCAACTAGCTACAGATTTGATTGTTTTTGGTCTTGATCTTGACTAGGTCTCACTTTCATCTGGACTTGATCTTGAATCTCCTTGACTCCCTTAAGACTCACTAAAATTCACTAAAAACAGCCCTGACTGAGACACTTATACCAAGACGCTTGATAAGTCGATAACATTCTGAAAAACCTCAGTGAGGGAATCACCTAATTGCCAAACGTCAAACAAGTTATGGCATtcatacagtgcattcagagcATTCAGCCGTCTACGACACACCCCGATTGCAAATGAATGATGGCCCATACTAACCACTTACATCTGGCCCACATCCCTCTGTGGAATGACAGCAATGAAGTCATCTGTGTCTGACTGCTGGAACGCAGCCACAACTCAAGCTCATATCGAAAATACACTATCTTAGATGCGATATGGACgggaaataaaatggaaatagaGTACAAGAGTATTAGCATAGCTCCATGATTGTCAAAGTGGGGTTTGTGAAGGGATTTCCTCCAGTGTACATTTTGTTACAATGTTGGAAATCGTTATCAACCTTTTTaatattgagttcttatagatATTAGCTTGTCTGACTGGCCGATTCGCAATAACTccaataaatattcaaaatatcattgtaaacatttaaataataggCCTAATATGTGAATTGTTTGATTGTGTGCATAAATTCAGCCTGTACTGAGCGTATCTATGACattatttacagttaaagatccctggctgcaaaaaagtTTGCTATGACTGACTCTTATTAGCCAAACCTCAACCACATTTGTCCCGAAATTGCATTGCTGCTATGTCCGAGTATCACCACTGTCTGTCATTTGTGACCATtactgtttatttcactgtgaagcTGAAGTCCCCCCCTCCCATGTCACCTCGCATAACCCTAGAGGAAAGTAGAAGAATGTTATCAGATGTTTATTTCTGCTTCAATTACTTCATAGCCACATTCTTCTGAGTTACAACCTGTGCAGATCAGTAGTGCAGGAAAAACTTAAAAATAGACATGCttttttgtgtgcatttgaaaTAGACAtgctttttgtgtatttgaacacCACACTAGTTATAACATGTTATAGTGTTTGATAGTggtattaaatacattattatacaagTCAATATTGTGATCTGTGTTACTTGCACTGTTCATTTGTTTAGCATTTGTGCTTGTCGCAAAAAATGTGTCTAGCTGCACAGCCAAATTCCTGATAAGTGAGGTCTTAGAAAAGTAAATCAGATTCTGTGTGCTCTCATGCTCTTTTTTGGACAATGTTTCTTGTTTATTGAAAAAGCTTTAGTGtagaaataagagaaaacacaagtaaataaaattatggTACGAATACATACAGACCCAAAAAGATTAAATTAGCTGCACAGAAAATAGAAAGGTACGTATAAAGTTGCAGTGTAACCACACATTGAAGATcagagaaataaatgtaaagaagtgaagaaaaaatagTAAAGAAATTGTCAGTAGACCCTTGCAGTATAAACGTAATTTTCTCCAGGAAACATATtgtacttgttttttgtttttccagtgCAGGACGTTTAAACATCTGGCAAGCACTCATGTTTTAATAACGGTCTTCAGCTCACGAATGCATCCGAACACACAGCTGAGACACTTTTCTTAATCATGATGCATTACTACTATATTACATACTACTTTATTccagaaaaataacacaaacgAAGCACTTTCAGAGACTGAGAGCAACATAAACAGCATTGCTATGAACGCTGAGTGTGATGTGTTAAGCTCACCTCGGTGTTGAGTGGCAGCAGGTTCAGCGTGAGCCTCGGTCTCGCTCCTGCTTCTCCCACAGCATGGGCCGTTTGTTTAACGTTTCAGCGTTTTCACCACACCTCCCCGTTCGTGACTCAGCCAATAAGGTCAACATCGTGCCTCAGGCAGCCACACAGGCCTTTAGCCTTACAAGGCAAAGGAATCTGGGAGCTCCTGCCGTCCCACATCCTGATGTTTTCTCGCAAAAGAAACACTCTCTGATGCCTGGAGGAGTCGCAAGGCTGAGGCCTTATTTAGCAAGCAAATGAATACTTATGCTACAGCAGGGCGATGTTTCCTTTACAACAGTGTCATGGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307564 True 4086 lncRNA 0.40 2 23006360 23010550

Neighbor

gene id symbol gene type direction distance location
pfkfb2a pfkfb2a,LOC108276158,LOC108439471,LOC104942567,LOC103358644 coding downstream 1753 22986458 ~ 23004607 (-)
LOC113530928 NA coding downstream 184163 22813004 ~ 22822197 (-)
LOC113530929 NA coding downstream 195739 22801924 ~ 22810621 (-)
pdyn pdyn coding downstream 244340 22758451 ~ 22762020 (-)
LOC113530789 LOC108275917,LOC108439484 coding downstream 264806 22733952 ~ 22741554 (-)
dlgap4a LOC108276061,LOC108439469 coding upstream 9180 23019730 ~ 23126956 (-)
rprd1b rprd1b coding upstream 171059 23181609 ~ 23186306 (-)
ctnnbl1 ctnnbl1,LOC107694421 coding upstream 234179 23244729 ~ 23279510 (-)
itchb LOC108276113,LOC108442805,LOC108233117 coding upstream 320699 23331249 ~ 23359264 (-)
LOC113530415 NA coding upstream 383122 23393672 ~ 23395815 (-)
G259724 NA non-coding downstream 218381 22742744 ~ 22787979 (-)
G259692 NA non-coding downstream 349431 22653338 ~ 22656929 (-)
LOC117599239 NA non-coding downstream 536607 22467663 ~ 22469753 (-)
G259337 NA non-coding downstream 582118 22422592 ~ 22424242 (-)
G259294 NA non-coding downstream 635271 22341861 ~ 22371089 (-)
G259809 NA non-coding upstream 299 23010849 ~ 23012362 (-)
G259812 NA non-coding upstream 6756 23017306 ~ 23018360 (-)
G259838 NA non-coding upstream 10811 23021361 ~ 23021570 (-)
G259839 NA non-coding upstream 11864 23022414 ~ 23022680 (-)
G259897 NA non-coding upstream 169832 23180382 ~ 23181592 (-)
si:ch73-217n20.1 NA other downstream 25374 22961578 ~ 22980986 (-)
G259306 LOC108275814,LOC108411446 other downstream 556933 22446030 ~ 22449427 (-)
cpeb2 cpeb2,LOC108276376 other downstream 957972 22016047 ~ 22048388 (-)
fyco1a LOC108275732 other downstream 1051698 21925244 ~ 21954662 (-)
trnaq-uug_7 NA other downstream 1651663 21354439 ~ 21354697 (-)
LOC113530288 vstm2l other upstream 181707 23192257 ~ 23240347 (-)
e2f1 e2f1 other upstream 298349 23308899 ~ 23317464 (-)
G260310 NA other upstream 753124 23763674 ~ 23764163 (-)
LOC113530810 LOC108275656 other upstream 962815 23973365 ~ 23979695 (-)
reps2 reps2 other upstream 1263187 24273737 ~ 24316415 (-)

Expression


Co-expression Network