G259812


Basic Information

Item Value
gene id G259812
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23017306 ~ 23018360 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307566
aaaaatcaagggtTACAGGATACTAGAGaatatattgcttttttttagaaaatttagAACACTTGGGTTCTTTAGTTGGATGAGATCTTTATTTCATTAGAAGTCATTTCCAGAGTATCTATGCATCACTTTAGTGTACAACCATTATCTTGGGAACAGACTCCAGCTTCGGGGCAAATCCTGTGAAATAGTCACGTAGAGTTCACGATTCTTAGTCACATGATTGAATATAGCCGTTTAGGACCAATTTTGCCCTTCATAATGTATCTGTCACCGCTTTCCTCACCACACCTCACCCCACGTTCACACAAGCGAGCGGCAAGCGGCCGTTTTATTTTCTACATACGTGCTCGACACAGAGCCACGATTTCAGCAACACTTGaaatttgaattgaaattttctcaattctatgcaaattaggcgTGACGCTGTAAAATCCATTCATGATTCctggctcgaatgattcctcggaccaatcttTTAGTGCATGTGGACCGACATTTCAttagttccccactcacaactttaacTGAAATTATTTCCAAAGATGGACGTGTATAGAGACATCAGGAAGAAGAAtgaagcttggaaggaagtagtaAATCAAACAACTAATTTTCACACTGGTTAGTGTTTttctagttagctttagaagatatttatagcttaaaaaaaaacaaacaaaaaaaaacgctgtagaagccacgcccacaagtgaaACAAGATACTTGTCACTCGCTAGTATGAGCGTAGATTGATCCAACCCATACACAGAGCTCGTGGAAACACAACATGGCTGTCCATCCCCGAATACCACCAAGATACCAGTCTCTCAAACGCCgcttaatgagtgtgtgtgtgtgtgtgtgagagagatatacGGCATATCTGTGAGCTCCATCGTGCAACACACTCCGATGTCACACTGTGTTTTGAACCTTGCTAGCAAACATCACATAacccataaaacacacacaatatgagCGTTCAAGGTCCATGTACATTTCATGATTTCATGACGCCGCTACAATCCCGCCTTCTTTTTTCCTGTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307566 True 1055 lncRNA 0.41 1 23017306 23018360

Neighbor

gene id symbol gene type direction distance location
pfkfb2a pfkfb2a,LOC108276158,LOC108439471,LOC104942567,LOC103358644 coding downstream 12699 22986458 ~ 23004607 (-)
LOC113530928 NA coding downstream 195109 22813004 ~ 22822197 (-)
LOC113530929 NA coding downstream 206685 22801924 ~ 22810621 (-)
pdyn pdyn coding downstream 255286 22758451 ~ 22762020 (-)
LOC113530789 LOC108275917,LOC108439484 coding downstream 275752 22733952 ~ 22741554 (-)
dlgap4a LOC108276061,LOC108439469 coding upstream 1370 23019730 ~ 23126956 (-)
rprd1b rprd1b coding upstream 163249 23181609 ~ 23186306 (-)
ctnnbl1 ctnnbl1,LOC107694421 coding upstream 226369 23244729 ~ 23279510 (-)
itchb LOC108276113,LOC108442805,LOC108233117 coding upstream 312889 23331249 ~ 23359264 (-)
LOC113530415 NA coding upstream 375312 23393672 ~ 23395815 (-)
G259809 NA non-coding downstream 4944 23010849 ~ 23012362 (-)
G259811 LOC100697131,LOC105901900 non-coding downstream 6756 23006360 ~ 23010550 (-)
G259724 NA non-coding downstream 229327 22742744 ~ 22787979 (-)
G259692 NA non-coding downstream 360377 22653338 ~ 22656929 (-)
LOC117599239 NA non-coding downstream 547553 22467663 ~ 22469753 (-)
G259838 NA non-coding upstream 3001 23021361 ~ 23021570 (-)
G259839 NA non-coding upstream 4054 23022414 ~ 23022680 (-)
G259897 NA non-coding upstream 162022 23180382 ~ 23181592 (-)
G260021 NA non-coding upstream 314309 23332669 ~ 23335335 (-)
G260055 NA non-coding upstream 450441 23468801 ~ 23469073 (-)
si:ch73-217n20.1 NA other downstream 36320 22961578 ~ 22980986 (-)
G259306 LOC108275814,LOC108411446 other downstream 567879 22446030 ~ 22449427 (-)
cpeb2 cpeb2,LOC108276376 other downstream 968918 22016047 ~ 22048388 (-)
fyco1a LOC108275732 other downstream 1062644 21925244 ~ 21954662 (-)
trnaq-uug_7 NA other downstream 1662609 21354439 ~ 21354697 (-)
LOC113530288 vstm2l other upstream 173897 23192257 ~ 23240347 (-)
e2f1 e2f1 other upstream 290539 23308899 ~ 23317464 (-)
G260310 NA other upstream 745314 23763674 ~ 23764163 (-)
LOC113530810 LOC108275656 other upstream 955005 23973365 ~ 23979695 (-)
reps2 reps2 other upstream 1255377 24273737 ~ 24316415 (-)

Expression


Co-expression Network