G259962


Basic Information

Item Value
gene id G259962
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23307755 ~ 23308592 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307732
cacacacacaggcagtttATTATCTCATACTCATGTATGATTGAAATAgcttattaaataaaacctctacagattaCTAACTTAAAACTAAGTTATACGAACCAGGGCTGTGTTCCAATACCACATTCATAACACGCCCTCGTCGACTTCCCCTACCTATTTGCCCTCGGTTCAATCCTCGCCACTGTGTTTAGGGTTCTATCAAGAACATTGGAAGGAGAATATTACCCAAAGGCAGAAACGCTAACAATTATTTCaactttatacatttttactagCTAGCAAGTCGGCTAGTTAGCAAAATGGCTCTGGGACTTTGTGCTTTCGATGTAAGAATGTGAACAAAAGACATTAGCTCTGTTTAAATGGTTAAAGTAGTAAGAAAATTCCAGGGAAAAAAAGCACCGGGAAAATACTTCACAGACAGAGAGCCTAAGACTGACACTAGAAATATAGCGATCTAGCGAGCACATAGCTGTTAAGTCTTTGATACAGACTTATGTAAAGACGGAGTGACAGTAAAAACTACATAAAACTGTcaagaatatcaacatttcactCAGATGTGTTGGAAAAATGCTAGAAAAATACTCAGTGTGAGtaaaattaacaataatttCCCTTAGCATCGATGGCTAACCAATCTGTCTGTTGTGCCATGCTGAGAAGCTACATTTCTGTGTCTCTAGAAAATCTTGATTTTCTTTGGAATATTCTTGTAAAAGTGATGAATACGAATGCGTTAGACGTTAGTTGTGAGGGAAAGTCGACGCGAGAGTGTTCAAATAGTAACGAAACTCAGAGCCAGTGTAGAACATATTACaagaaattattcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307732 True 838 lncRNA 0.37 1 23307755 23308592

Neighbor

gene id symbol gene type direction distance location
tti1 tti1 coding upstream 112500 23186491 ~ 23195255 (+)
tgm2a tgm2 coding upstream 128432 23172257 ~ 23179323 (+)
si:dkey-65j6.2 kiaa1755 coding upstream 136004 23152604 ~ 23171751 (+)
myl9a LOC108276062,LOC103022187,LOC108439470,LOC107737046,LOC107653232,LOC107569439 coding upstream 296294 23006566 ~ 23011461 (+)
scube3 scube3,LOC108276393,LOC108439473,LOC106566910 coding upstream 355825 22859162 ~ 22951930 (+)
znf341 znf341 coding downstream 10769 23319361 ~ 23331266 (+)
LOC113530556 NA coding downstream 99217 23407809 ~ 23411399 (+)
LOC113530872 NA coding downstream 106225 23414817 ~ 23421228 (+)
LOC113530918 NA coding downstream 113602 23422194 ~ 23433656 (+)
LOC113530555 NA coding downstream 131904 23440496 ~ 23443625 (+)
G259690 ctnnbl1,LOC106942865 non-coding upstream 29846 23277434 ~ 23277909 (+)
G259540 LOC108276061 non-coding upstream 243186 23026446 ~ 23064569 (+)
G259539 NA non-coding upstream 285307 23021970 ~ 23022448 (+)
G259536 NA non-coding upstream 291859 23013384 ~ 23015896 (+)
G259498 NA non-coding upstream 466016 22839217 ~ 22841739 (+)
G259968 NA non-coding downstream 24088 23332680 ~ 23348937 (+)
G259978 NA non-coding downstream 36270 23344862 ~ 23362290 (+)
G260009 NA non-coding downstream 160234 23468826 ~ 23469057 (+)
G260011 NA non-coding downstream 165321 23473913 ~ 23474444 (+)
G260074 NA non-coding downstream 218836 23527428 ~ 23562384 (+)
LOC113530514 LOC108275916 other upstream 627213 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1765328 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2068756 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 2400296 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2793560 20510244 ~ 20514195 (+)
LOC117599309 NA other downstream 63152 23371744 ~ 23383653 (+)
G259993 NA other downstream 78946 23387538 ~ 23389314 (+)
G260415 NA other downstream 723635 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 959985 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1091992 24400584 ~ 24453538 (+)

Expression


Co-expression Network