LOC117599309


Basic Information

Item Value
gene id LOC117599309
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23371744 ~ 23383653 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307769
CGTAGGCAATGATACAATAAATCCCTCCCTCTGTGCACAAACCTCCTCCCCCACTGCACACTAATAAAACTGGAAGTCAGATCGCTCTCTCAGGACAAGCTGCATCATCTTCACAACTTCACTCTTCTGCACTCCACCAGCAATGAGGCCACTAGTGACTCTTGTGTTCATCTGCATGCTTTTACCCAAAGcTGCTGGAGAACTGAGCTGCTATACCTGTAATCCCCCTAACTGTGAACAATATGTTAAGGAGCCCTGTCCTTCAGGTTCCGATCGCTGCCTCACTGCATCAGctGCTTTGTTAAAGAAGAGGTATATTGTGAAAACTTGTGAAACAAAGCAGTTCTGTGACACGCATCAGTCATCATTAGCAGGACTTGTCCTTGAAAATGTGGAGTGTTGTCAGGAGAATCTGTGTAACGGTGCTGAGAGCTTcacactgagtttcctcctcATGTTcatccctctgctctcctccatcctcttctACTGAGCTCTGAGGAAAAAGCTCACTTAAAGCTTTATCTACAACATGATtacaaaataagaaagaaaaatgaaatgattctcTTTTTCCACTTCACTGTACTGCCATTTATAACATAAGTTCTGTTCTTTGTGTTTGTCCAGTTAATTTCTCTGTAAAAACATGTGCACTTCTTCCCCATGGTAGCAGCAGGAGCAGTTTGGTAGCAGCAGGAGCAGTATATTAGCTCATTAGCTGTGGTAGCAGGTCTCATTAGCATATACACtgttcttcatatttatttaatttgctaAGCTACTGTCAAGTTTGTTTGGCGGGGGTATGGCATATCTCAGATACTATCGGCTGTTGTGAaaactctgacttcctgtttcaaaagggaAATctagtcatgtgaaaaaaataggACACCCCATGAAAGCCTGTAATGACATATATTTCTTAGCCTACCAATGTTCCTGAGGTGCGAAAAAAAGACTTTCCTATTAATATAATCTAGTGTCAAGTGTCAAGAGAGAGACTCGAGTCAATAATCACTAGATATTTCACTCCTGCACATGATGTATTTAGCTGAGAGGCCAATCAGATATTAAGCATCCAGTGCCTAATATATTCTAATACTACTAAACTACatattcctcaactttattcaACTTGTATCTccctttttatcattttatctctAACTTTTATCATactgctttcatttttatgcaATAACAATTTTATTCACAATAAATGTCCAATTTGCACAGCTTACTAGTGTGTCCCTAGAGGAACCTAGCATTTAAATTTCATGACAATAGGTTAACATTAACCCTGTTAAATATCTGCTGaaatatgattggctgatggcagcCACGTTTTTGAGTCATCAGATCATCATCAATGACACAGATATGCACTATGCCAAATTTCAGATCATTAGGACTTACAGTTCCTGAGAACAAGTTATTTGACCTTAATGCCACCCCTACGGATGACCACACCCTAAACTTTGCCATATTACTGGTGGCCATATTATTCAgaaatctcaacatgttttcGGTAATTATTCAGGTTCACATGCTCCTGGGTAGATTGACACTGAGTTCAAAAGGTCAAAAATCCTAGGATTAGTTCACAAAAGTAACTTTcatatattatgcaaattatcctAAAATAAAACTGGGCAGAGATAAATTGTTCTGAAGACTGTTTTGGATAAGCAAAGGAATCAGatgaaaaaagcagcttgtttgCTGGGTTTGGGCACAGAGTAGTACCTGCTGATCAAGTgaagcattttgttttgttttatgtctaATTCCTTGGAGTGTAGAGCCAAAGGTGTAGGTTTGATTTTGACATTGGTGGGGAC
>TU307771
CGTAGGCAATGATACAATAAATCCCTCCCTCTGTGCACAAACCTCCTCCCCCACTGCACACTAATAAAACTGGAAGTCAGATCGCTCTCTCAGGACAAGCTGCATCATCTTCACAACTTCACTCTTCTGCACTCCACCAGCAATGAGGCCACTAGTGACTCTTGTGTTCATCTGCATGCTTTTACCCAAAGcTGCTGGAGAACTGAGCTGCTATACCTGTAATCCCCCTAACTGTGAACAATATGTTAAGGAGCCCTGTCCTTCAGGTTCCGATCGCTGCCTCACTGCATCAGctGCTTTGTTAAAGAAGAGGTATATTGTGAAAACTTGTGAAACAAAGCAGTTCTGTGACACGCATCAGTCATCATTAGCAGGACTTGTCCTTGAAAATGTGGAGTGTTGTCAGGAGAATCTGTGTAACGGTGCTGAGAGCTTcacactgagtttcctcctcATGTTcatccctctgctctcctccatcctcttctACTGAGCTCTGAGGAAAAAGCTCACTTAAAGCTTTATCTACAACATGATtacaaaataagaaagaaaaatgaaatgattctcTTTTTCCACTTCACTGTACTGCCATTTATAACATAAGTTCTGTTCTTTGTGTTTGTCCAGTTAATTTCTCTGTAAAAACATGTGCACTTCTTCCCCATGGTAGCAGCAGGAGCAGTTTGGTAGCAGCAGGAGCAGTATATTAGCTCATTAGCTGTGGTAGCAGGTCTCATTAGCATATACACtgttcttcatatttatttaatttgctaAGCTACTGTCAAGTTTGTTTGGCGGGGGTATGGCATATCTCAGATACTATCGGCTGTTGTGAaaactctgacttcctgtttcaaaagggaAATctagtcatgtgaaaaaaataggACACCCCATGAAAGCCTGTAATGACATATATTTCTTAGCCTACCAATGTTCCTGAGGTGCGAAAAAAAGACTTTCCTATTAATATAATCTAGTGTCAAGTGTCAAGAGAGAGACTCGAGTCAATAATCACTAGATATTTCACTCCTGCACATGATGTATTTAGCTGAGAGGCCAATCAGATATTAAGCATCCAGTGCCTAATATATTCTAATACTACTAAACTACatattcctcaactttattcaACTTGTATCTCccttttatcattttatctctAACTTTTATCATactgctttcatttttatgcaATAACAATTTTATTCACAATAAATGTCCAATTTGCACAGCTTACTAGTGTGTCCCTAGAGGAACCTAGCATTTAAATTTCATGACAATAGGTTAACATTAACCCTGTTAAATATCTGCTGaaatatgattggctgatggcagcCACGTTTTTGAGTCATCAGATCATCATCAATGACACAGATATGCACTATGCCAAATTTCAGATCATTAGGACTTACAGTTCCTGAGAACAAGTTATTTGACCTTAATGCCACCCCTACGGATGACCACACCCTAAACTTTGCCATATTACTGGTGGCCATATTATTCAgaaatctcaacatgttttcGGTAATTATTCAGGTTCACATGCTCCTGGGTAGATTGACACTGAGTTCAAAAGGTCAAAAATCCTAGGATTAGTTCACAAAAGTAACTTTcatatattatgcaaattatcctAAAATAAAACTGGGCAGAGATAAATTGTTCTGAAGACTGTTTTGGATAAGCAAAGGAATCAGatgaaaaaagcagcttgtttgCTGGGTTTGGGCACAGAGTAGTACCTGCTGATCAAGTgaagcattttgttttgttttatgtctaATTCCTTGGAGTGTAGAGCCAAAGGTGTAGGTTTGATTTTGACATTGGTGGGGAC
>XM_034312230.1
AGGCGTAGGCAATGATACAATAAATCCCTCCCTCTGTGCACAAACCTCCTCCCCCACTGCACACTAATAAAACTGGAAGTCAGATCGCTCTCTCAGGACAAGCTGCATCATCTTCACAACTTCACTCTTCTGCACTCCACCAGCAATGAGGCCACTAGTGACTCTTGTGTTCATCTGCATGCTTTTACCCAAAGcTGCTGGAGAACTGAGCTGCTATACCTGTAATCCCCCTAACTGTGAACAATATGTTAAGGAGCCCTGTCCTTCAGGTTCCGATCGCTGCCTCACTGCATCAGctGCTTTGTTAAAGAAGAGGTATATTGTGAAAACTTGTGAAACAAAGCAGTTCTGTGACACGCATCAGTCATCATTAGCAGGACTTGTCCTTGAAAATGTGGAGTGTTGTCAGGAGAATCTGTGTAACGGTGCTGAGAGCTTcacactgagtttcctcctcATGTTcatccctctgctctcctccatcctcttctACTGAGCTCTGAGGAAAAAGCTCACTTAAAGCTTTATCTACAACATGATtacaaaataagaaagaaaaatgaaatgattctcTTTTTCCACTTCACTGTACTGCCATTTATAACATAAGTTCTGTTCTTTGTGTTTGTCCAGTTAATTTCTCTGTAAAAACATGTGCACTTCTTCCCCATGGTAGCAGCAGGAGCAGTTTGGTAGCAGCAGGAGCAGTATATTAGCTCATTAGCTGTGGTAGCAGGTCTCATTAGCATATACACtgttcttcatatttatttaatttgctaAGCTACTGTCAAGTTTGTTTGGCGGGGGTATGGCATATCTCAGATACTATCGGCTGTTGTGAaaactctgacttcctgtttcaaaagggaAATctagtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307769 True 1847 TUCP 0.39 4 23371747 23383653
TU307771 False 1846 TUCP 0.39 4 23371747 23383653
XM_034312230.1 False 882 mRNA 0.43 3 23371744 23375743

Neighbor

gene id symbol gene type direction distance location
znf341 znf341 coding upstream 40478 23319361 ~ 23331266 (+)
tti1 tti1 coding upstream 176489 23186491 ~ 23195255 (+)
tgm2a tgm2 coding upstream 192421 23172257 ~ 23179323 (+)
si:dkey-65j6.2 kiaa1755 coding upstream 199993 23152604 ~ 23171751 (+)
myl9a LOC108276062,LOC103022187,LOC108439470,LOC107737046,LOC107653232,LOC107569439 coding upstream 360283 23006566 ~ 23011461 (+)
LOC113530556 NA coding downstream 24156 23407809 ~ 23411399 (+)
LOC113530872 NA coding downstream 31164 23414817 ~ 23421228 (+)
LOC113530918 NA coding downstream 38541 23422194 ~ 23433656 (+)
LOC113530555 NA coding downstream 56843 23440496 ~ 23443625 (+)
LOC113530919 NA coding downstream 63976 23447629 ~ 23450712 (+)
G259978 NA non-coding upstream 9454 23344862 ~ 23362290 (+)
G259968 NA non-coding upstream 22807 23332680 ~ 23348937 (+)
G259962 NA non-coding upstream 63152 23307755 ~ 23308592 (+)
G259690 ctnnbl1,LOC106942865 non-coding upstream 93835 23277434 ~ 23277909 (+)
G259540 LOC108276061 non-coding upstream 307175 23026446 ~ 23064569 (+)
G260009 NA non-coding downstream 85173 23468826 ~ 23469057 (+)
G260011 NA non-coding downstream 90260 23473913 ~ 23474444 (+)
G260074 NA non-coding downstream 143775 23527428 ~ 23562384 (+)
G260083 NA non-coding downstream 170943 23554596 ~ 23555077 (+)
G260222 NA non-coding downstream 443239 23826892 ~ 23827631 (+)
LOC113530514 LOC108275916 other upstream 691202 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1829317 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2132745 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 2464285 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2857549 20510244 ~ 20514195 (+)
G259993 NA other downstream 3885 23387538 ~ 23389314 (+)
G260415 NA other downstream 648574 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 884924 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1016931 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1241284 24624937 ~ 24636129 (+)

Expression


Co-expression Network