G260217


Basic Information

Item Value
gene id G260217
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23867651 ~ 23869556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308080
TCTCTGTGCTTCAGTGGCACAATTAGAAACTAAGAATACATTCTGTGTATGAGACTGTGGCTTGATTGGATGAGTGCTACCTTTGGGTTAGAAGATTGCTGGTTCAAACCCCAACCAGAGCTCTAGGCTATGAATGTAGAAGTGTCGATACATTATGAACCCAAACATTGGGTGCTGAAAGAAAACAACCATTTCCTCCTCCAtgaaatgtttctctttcaCTTGGACTGTTGAGCCAGTTATTAAATTGGACAAAAGTCCAATAAGCAACCTCATCACCTACTCTgtggtggtgcagtggataGAGTCATGGTCTCAGATGCTTGCGGTCCTTGGGTCAAATCTGCACTTTTGCTTGTGGGCCAGATTAAGTAGACAAAAGTGAAAATTACTATAAATCAAGCTACTCGTAAGAGACTCTGTGGCTCAATTGGCTGAGCTTCACCTCTGGGCCAAGAGGTTActggttcaaaccccagccagGTCTCCAGGATATGAGCGTAGAAGGTTCAGTAACAGATGATTCAAGCACAAAGTGCAGGAAGGTGTGTGCAGGAAGGCATGGCCCTGAATTGAGGTGGGGGGTAGTTACTGGGCAGCTGTATATAGGCTGTAAAATTACCTATCACCCACACTTTCCTTGGGGTCCTCAAACACCATGCACTCTAGCCACCATTTCATCTTAATCACCTGCTTCACTACCCAACATGTAGCATGTCTGCAGGGGACAAGCCAGAtttgaaccagcaacctctGAGTCGAGAGGCAAGGCTCTTACCACAAAGCCACACAGTCCCACACAAAGAGAGTGATGTTGTAGGATGTTGTCTTTTAAaacaaccaccaccacaaaaaaaaaaaaacccacattgtAAGTTAAGTTAAGTATGAAGGTCCAATCTGAATGCTCAGTAAAATACATGAGGCAGAGTTTTGCAAAAGAGGGGACTGAATACCTGCTCGTTTATGCATTTATCTTATAAGCCTTCTTGTGGTGGCAGCgcgatgcataaaatcatgcaaataaagGTCAAGAGCTAAAAAAATGggtaaaaaatgtgatctcagtggcttTGACCTTggaatggttgttggtgccagatggtctggtttgagtatttcagatactgctgatctccttggattttcacacacaacagtctctacagtgAGCATCAGATTTGTGGGTGgaagcaccttgttgatgagagaggtcaggggAGAACGGCCACACGGGAAGGTTACGggaactcaaataactactctttacaaccatggtaagcagaaaagcacctcagaatgCTGAACATGTCAAACTTGggggtggatgagctacaacagcagaagaccacatcaggttccacatCTGTCAGCCAAATACAGAAATCTGACTGTACAGTGGACAGAgatgaagactgaaaaaatgttGCCTGGTCTGAAGAACTTTGGTTTCTGCTGCAACATGCAGAAGGCAAGGTCAGAATTGGGTGTCTGCAACATGAATCTATGAATCcatcctgccttgtgtcaacactTCAAGCTTCTGGTGGTGGTATAACGGTGtggagaatgttttcttggtacACACTGGGCCCCTTAATGCTTTATCGAGCATCAGTCcttctgagtattgttgctgaccacgtGCATCTCTTTATGGCCACATCTTGTAATGGCTACATCCAGCCCTGTGACAAAGCAGAAGTTGTCTCTAACTGAATCCATGAATATGACGAAgagatcagtgttcttcagtAGCCACTCCAGTCACCAGAACTGAATCTagtagagcacctttgggatgtggcaGAATGGAAGAGTCACAGCATGAaggtgcagctgacaaatctgcggCAATTATGTGAAGCAATCACGTTAACATAGACAAGAACCTTGCGGAATACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308080 True 1906 lncRNA 0.44 1 23867651 23869556

Neighbor

gene id symbol gene type direction distance location
ddah1 ddah1,LOC107570409,LOC106584046 coding upstream 3213 23809480 ~ 23864438 (+)
znhit6 znhit6 coding upstream 69622 23769235 ~ 23798029 (+)
LOC113530587 col24a1,LOC107660294,LOC107709510,LOC107655744,LOC107570408 coding upstream 104114 23672046 ~ 23763537 (+)
si:ch211-149b19.3 LOC108275812,LOC108441537 coding upstream 225087 23636247 ~ 23642564 (+)
si:ch211-149b19.2 LOC108275803 coding upstream 232881 23630593 ~ 23634770 (+)
c16h1orf52 c15h1orf52 coding downstream 3261 23872817 ~ 23875387 (+)
syde2 syde2 coding downstream 19150 23888706 ~ 23921976 (+)
mcoln3b mcoln3 coding downstream 82104 23951660 ~ 23967886 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding downstream 178460 24048016 ~ 24055524 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding downstream 221566 24091122 ~ 24131107 (+)
G260223 NA non-coding upstream 5081 23861642 ~ 23862570 (+)
G260222 NA non-coding upstream 40020 23826892 ~ 23827631 (+)
G260074 NA non-coding upstream 305267 23527428 ~ 23562384 (+)
G260083 NA non-coding upstream 312574 23554596 ~ 23555077 (+)
G260011 NA non-coding upstream 393207 23473913 ~ 23474444 (+)
G260232 NA non-coding downstream 48325 23917881 ~ 23918391 (+)
LOC117599261 NA non-coding downstream 132993 24002549 ~ 24003381 (+)
LOC117599260 NA non-coding downstream 141119 24010675 ~ 24013004 (+)
G260410 NA non-coding downstream 153820 24023376 ~ 24030335 (+)
G260430 NA non-coding downstream 262162 24131718 ~ 24131958 (+)
G259993 NA other upstream 478337 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 483998 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1187109 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2325224 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2628652 21228320 ~ 21238999 (+)
G260415 NA other downstream 162671 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 399021 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 531028 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 755381 24624937 ~ 24636129 (+)

Expression


Co-expression Network