G260409


Basic Information

Item Value
gene id G260409
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24158866 ~ 24161640 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308296
AAAAACCTTTAATAAAACTTCTGACTACATGTGAGATAATGCCAAAGAGAAAacttttatttagtaaaaatttaaactacacacacacacacacacacacacacacacacacacagaaagaaacagtTCCAAACGTCACAACAGTTTATTCAGACTGCTATATTATCATCACCTTTATTAAaccctgaaaacacacacacacacacacacacacacacacacacacacacacacacacacactccaggtcACTTGATTTTTACTGCGTTTCAAATCTCTGTGGATCAACGAGAGGCGGGGCTTAAGTTACATTTGATCACATGATGTAACGCATcacaaaatgtttctttttgtttcttcgattcagtacaaaattctACTTTATATTACATGATAGCagtttagcaacattagctaagctagccagctagctaagcTTTAGCCAGGCATTTATTTAGCTTAGCCGATGTTAACATTACCTCTGTAGCATTATAGCGCGGAACTACAGTAAACTAAATATACTGTGTAATCAAATCCAGTAGCCATGATCgctaaaaaaatagtttaacattttttttttttagttaaactCCAatttttccaggttatttgttgAATAAAAGCACAGCTGTGAGGCTGAACACATACTTCCACATGTTTACATACAATCACACTtaacattaactagctagcGAGCAAAATCACTCAGCTAAAGTTAGCTCGCATAAGAtggctaacatgagctagctgTCTACATTGATATGATATACAGTACGTAGCTACCATTGCGTTGTGGTGAAATGCGTTCACAAAGATTTTCTCGCACTGTGATTGGATGAAGCAGCTGCCgctcattaattattcatgagTTTTCCCAGCTTATGCTAGGACGTAATATTGTGTTAGGGGATTTATGGTGGTGTGATCGTATGTCactttaagctccgcccttgCAGAGACGCTGTGCAGAAGGACGTGTGTTGGAAATGAAACGGAATTCCAACATCCTCGGATCAGACAATGGGATTATCTTTGAAAGTCAGGAAGGTTTTAGTGTTAGAGAGTCACAATGAACTATTACACTcacattattatgattattattattattatctagtTCTGGATCTGGATCTTTCCTTCTGAATGCAGCATTCATGTCACATGGGGAGTCGGAATTTTGCAAGCTTGGACGCGAGGCAACTGCCAGCATAAACACACTGTTCTTCTGTGAAGAATCTTGTTGgaatattactttatttttcatgaattagAGCTGATAAATTTCACCACCTCCTTCCTGATGATTAGGAAGATCTCATGCTAAtaaacaaccagaaaaaaagtttttcaaggaatgaaatggaaaaacgTGAACGCTAAAAGCTTCGGCATACTTAATGTGGAGACGAGACAGCTTCACGAGCTCCAGTGCTGCAGGTGGCGCCGTTAAAATTACACAACAGCTTCCACTGTGACAGAAAAGCTGCCGATCCTCCTTTGTTTCTAACGACCAATCACGAGCTTGGTTGAGTAGCGTGATCGCAGCTACGCACGACGTCCATTTGCTTCGCGATTACATGCACGAAGTGCGCTGAGGCTCCCGGAATAACGGGACGTTTTCCGATCTTCACAACGTGACAAGAATGCAGCATGAGTCCTGTTTCCTTCTCACTTTAATCAACAAATTTAATCATCAACGCTTTCGTAACACGCACGTGACAGTTTGCATAAAAATGTGAACATACACAACATCCTTTCTCTAATCTCGCAGGACAGAATTAGAGAATTAGAGAAtctaactgacatttcagatgACCAATCAGAGACTACTTTCAGAAATCACTCCAAACTCCGCCCACCAAACGTGTCACGGTTGATCGTCTATGTTTGCGGTAAGTGGGACTGTGTGTATTTCGTTTTTAGCCAAACTGACACTTTCACAAATTTCACATATTCCtgagtgtgttagagaaggAGTAAAGGAGTAAAGAAGGAGGACTGGGACATGATCTGGTGTCAAGGTGGGAAATGATCTGGGGTCGAGATGGATCATGATCCAGTGTCGGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATGTGTCGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATCCGGCATTGGGGTGGGAATATGATCCGGTGTTGGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATCCGGTGTCAGGGTGGGAATATGATCCAGCATTGGGGTTAGGTATACGATCCATTGTTGGGGTGGGAATATGATCCAGCGTTAGGGTGGGAATATGATCGGAGATCGAGCTGGGAATATGTCGGAGCTCAGTGGTGCTGATCTCGGGTTTAGTGGTGAGTGAGTGTCTGAAGGCTAAAGCAGAGATGAAAGAAGAGATGAGACTCTCCGTCCCTGCTCGAGTCGCGCTGACGGAGGGGACGCTCGTCCACGTGGGCGGAGTCTCACAGCTTGGCTTTGCCTGGTTGTAGCTGCAGGTTCTGGAGCTTCATGGCCATTCCCATGTTCCCTGTGACCTTCAGCTTTCCCTGGAAAAAC
>TU308297
AAAAACCTTTAATAAAACTTCTGACTACATGTGAGATAATGCCAAAGAGAAAacttttatttagtaaaaatttaaactacacacacacacacacacacacacacacacacacacagaaagaaacagtTCCAAACGTCACAACAGTTTATTCAGACTGCTATATTATCATCACCTTTATTAAaccctgaaaacacacacacacacacacacacacacacacacacacacacacacacacacactccaggtcACTTGATTTTTACTGCGTTTCAAATCTCTGTGGATCAACGAGAGGCGGGGCTTAAGTTACATTTGATCACATGATGTAACGCATcacaaaatgtttctttttgtttcttcgattcagtacaaaattctACTTTATATTACATGATAGCagtttagcaacattagctaagctagccagctagctaagcTTTAGCCAGGCATTTATTTAGCTTAGCCGATGTTAACATTACCTCTGTAGCATTATAGCGCGGAACTACAGTAAACTAAATATACTGTGTAATCAAATCCAGTAGCCATGATCgctaaaaaaatagtttaacattttttttttttagttaaactCCAatttttccaggttatttgttgAATAAAAGCACAGCTGTGAGGCTGAACACATACTTCCACATGTTTACATACAATCACACTtaacattaactagctagcGAGCAAAATCACTCAGCTAAAGTTAGCTCGCATAAGAtggctaacatgagctagctgTCTACATTGATATGATATACAGTACGTAGCTACCATTGCGTTGTGGTGAAATGCGTTCACAAAGATTTTCTCGCACTGTGATTGGATGAAGCAGCTGCCgctcattaattattcatgagTTTTCCCAGCTTATGCTAGGACGTAATATTGTGTTAGGGGATTTATGGTGGTGTGATCGTATGTCactttaagctccgcccttgCAGAGACGCTGTGCAGAAGGACGTGTGTTGGAAATGAAACGGAATTCCAACATCCTCGGATCAGACAATGGGATTATCTTTGAAAGTCAGGAAGGTTTTAGTGTTAGAGAGTCACAATGAACTATTACACTcacattattatgattattattattattatctagtTCTGGATCTGGATCTTTCCTTCTGAATGCAGCATTCATGTCACATGGGGAGTCGGAATTTTGCAAGCTTGGACGCGAGGCAACTGCCAGCATAAACACACTGTTCTTCTGTGAAGAATCTTGTTGgaatattactttatttttcatgaattagAGCTGATAAATTTCACCACCTCCTTCCTGATGATTAGGAAGATCTCATGCTAAtaaacaaccagaaaaaaagtttttcaaggaatgaaatggaaaaacgTGAACGCTAAAAGCTTCGGCATACTTAATGTGGAGACGAGACAGCTTCACGAGCTCCAGTGCTGCAGGTGGCGCCGTTAAAATTACACAACAGCTTCCACTGTGACAGAAAAGCTGCCGATCCTCCTTTGTTTCTAACGACCAATCACGAGCTTGGTTGAGTAGCGTGATCGCAGCTACGCACGACGTCCATTTGCTTCGCGATTACATGCACGAAGTGCGCTGAGGCTCCCGGAATAACGGGACGTTTTCCGATCTTCACAACGTGACAAGAATGCAGCATGAGTCCTGTTTCCTTCTCACTTTAATCAACAAATTTAATCATCAACGCTTTCGTAACACGCACGTGACAGTTTGCATAAAAATGTGAACATACACAACATCCTTTCTCTAATCTCGCAGGACAGAATTAGAGAATTAGAGAAtctaactgacatttcagatgACCAATCAGAGACTACTTTCAGAAATCACTCCAAACTCCGCCCACCAAACGTGTCACGGTTGATCGTCTATGTTTGCGGTAAGTGGGACTGTGTGTATTTCGTTTTTAGCCAAACTGACACTTTCACAAATTTCACATATTCCtgagtgtgttagagaaggAGTAAAGGAGTAAAGAAGGAGGACTGGGACATGATCTGGTGTCAAGGTGGGAAATGATCTGGGGTCGAGATGGATCATGATCCAGTGTCGGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATGTGTCGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATCCGGCATTGGGGTGGGAATATGATCCGGTGTTGGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATCTAGTTTTGGGGTGGGATATGATCCGGTGTTGGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATCCGGTGTCAGGGTGGGAATATGATCCAGCATTGGGGTTAGGTATACGATCCATTGTCGGGGTGGGAATATGATCTAGTTTTGGGGTGGGACATGATCCGGCATTGGGGTGGGAATATGATCCAGCATTGGGGTTAGGTATACGATCCATTGTTGGGGTGGGAATATGATCCAGCGTTAGGGTGGGAATATGATCGGAGATCGAGCTGGGAATATGTCGGAGCTCAGTGGTGCTGATCTCGGGTTTAGTGGTGAGTGAGTGTCTGAAGGCTAAAGCAGAGATGAAAGAAGAGATGAGACTCTCCGTCCCTGCTCGAGTCGCGCTGACGGAGGGGACGCTCGTCCACGTGGGCGGAGTCTCACAGCTTGGCTTTGCCTGGTTGTAGCTGCAGGTTCTGGAGCTTCATGGCCATTCCCATGTTCCCTGTGACCTTCAGCTTTCCCTGGAAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308296 False 2575 lncRNA 0.42 3 24158866 24161640
TU308297 True 2742 lncRNA 0.43 2 24158866 24161640

Neighbor

gene id symbol gene type direction distance location
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding upstream 27759 24091122 ~ 24131107 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding upstream 103342 24048016 ~ 24055524 (+)
mcoln3b mcoln3 coding upstream 190980 23951660 ~ 23967886 (+)
syde2 syde2 coding upstream 236890 23888706 ~ 23921976 (+)
c16h1orf52 c15h1orf52 coding upstream 283479 23872817 ~ 23875387 (+)
LOC113530931 LOC108275754 coding downstream 5080 24166720 ~ 24188371 (+)
cltrn tmem27 coding downstream 137956 24299596 ~ 24306661 (+)
mdp1 mdp1 coding downstream 150586 24312226 ~ 24315467 (+)
LOC113530532 LOC108275719 coding downstream 359239 24520879 ~ 24528915 (+)
LOC117599218 LOC108275604,LOC102207396 coding downstream 437518 24599158 ~ 24613089 (+)
G260434 NA non-coding upstream 12527 24145990 ~ 24146339 (+)
G260431 NA non-coding upstream 18247 24135794 ~ 24140619 (+)
G260430 NA non-coding upstream 26908 24131718 ~ 24131958 (+)
G260410 NA non-coding upstream 128531 24023376 ~ 24030335 (+)
LOC117599260 NA non-coding upstream 145862 24010675 ~ 24013004 (+)
G260441 NA non-coding downstream 8730 24170370 ~ 24171029 (+)
LOC113530917 NA non-coding downstream 187337 24348977 ~ 24351472 (+)
G260592 NA non-coding downstream 243404 24405044 ~ 24430691 (+)
G260632 LOC108275555 non-coding downstream 315926 24477566 ~ 24479800 (+)
LOC117599259 NA non-coding downstream 361618 24523258 ~ 24528915 (+)
G260415 NA other upstream 126142 24032227 ~ 24032724 (+)
G259993 NA other upstream 769552 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 775213 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1478324 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2616439 21538045 ~ 21542427 (+)
G260483 LOC108275756 other downstream 106937 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 238944 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 463297 24624937 ~ 24636129 (+)

Expression


Co-expression Network