Gene
RNA
| Item | Value |
|---|---|
| gene id | G260434 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 24145990 ~ 24146339 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU308326 | True | 350 | lncRNA | 0.50 | 1 | 24145990 | 24146339 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc1a7b | slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 | coding | upstream | 14883 | 24091122 ~ 24131107 (+) |
| gpx7 | gpx7,LOC107687580,LOC107562253,LOC102781798 | coding | upstream | 90466 | 24048016 ~ 24055524 (+) |
| mcoln3b | mcoln3 | coding | upstream | 178104 | 23951660 ~ 23967886 (+) |
| syde2 | syde2 | coding | upstream | 224014 | 23888706 ~ 23921976 (+) |
| c16h1orf52 | c15h1orf52 | coding | upstream | 270603 | 23872817 ~ 23875387 (+) |
| LOC113530931 | LOC108275754 | coding | downstream | 20381 | 24166720 ~ 24188371 (+) |
| cltrn | tmem27 | coding | downstream | 153257 | 24299596 ~ 24306661 (+) |
| mdp1 | mdp1 | coding | downstream | 165887 | 24312226 ~ 24315467 (+) |
| LOC113530532 | LOC108275719 | coding | downstream | 374540 | 24520879 ~ 24528915 (+) |
| LOC117599218 | LOC108275604,LOC102207396 | coding | downstream | 452819 | 24599158 ~ 24613089 (+) |
| G260431 | NA | non-coding | upstream | 5371 | 24135794 ~ 24140619 (+) |
| G260430 | NA | non-coding | upstream | 14032 | 24131718 ~ 24131958 (+) |
| G260410 | NA | non-coding | upstream | 115655 | 24023376 ~ 24030335 (+) |
| LOC117599260 | NA | non-coding | upstream | 132986 | 24010675 ~ 24013004 (+) |
| LOC117599261 | NA | non-coding | upstream | 142609 | 24002549 ~ 24003381 (+) |
| G260409 | NA | non-coding | downstream | 12527 | 24158866 ~ 24161640 (+) |
| G260441 | NA | non-coding | downstream | 24031 | 24170370 ~ 24171029 (+) |
| LOC113530917 | NA | non-coding | downstream | 202638 | 24348977 ~ 24351472 (+) |
| G260592 | NA | non-coding | downstream | 258705 | 24405044 ~ 24430691 (+) |
| G260632 | LOC108275555 | non-coding | downstream | 331227 | 24477566 ~ 24479800 (+) |
| G260415 | NA | other | upstream | 113266 | 24032227 ~ 24032724 (+) |
| G259993 | NA | other | upstream | 756676 | 23387538 ~ 23389314 (+) |
| LOC117599309 | NA | other | upstream | 762337 | 23371744 ~ 23383653 (+) |
| LOC113530514 | LOC108275916 | other | upstream | 1465448 | 22671398 ~ 22680542 (+) |
| LOC117599233 | NA | other | upstream | 2603563 | 21538045 ~ 21542427 (+) |
| G260483 | LOC108275756 | other | downstream | 122238 | 24268577 ~ 24269267 (+) |
| rnf146 | rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 | other | downstream | 254245 | 24400584 ~ 24453538 (+) |
| ddx58 | ddx58 | other | downstream | 478598 | 24624937 ~ 24636129 (+) |
