G260623 (tcp1)


Basic Information

Item Value
gene id G260623
gene name tcp1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24528252 ~ 24604059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308608
CTGTTTATTtagataaatgaatcatgtgaacaGACAAATCAGTGGTACacaccacttcctgtttatttctttaaacaGATCAGAGAAAGTGAATTACAGGTCATTACGTGTCATTTATCAGCAAGCCGTGTTGCTGCAGtagcaaaaacaaatacaagCTAAGTGCATGGGCTAAGCTACAACCGCTATAACATGGTGGGATGTTAATAAATAcggagtgggcggggctttacTCCTCCAGAGAGCCTGACTGGACGGCGTCCTGGTACGAAGGCCCGCCCTCTTTAGGCTCAGGGAAGAGTTTGATGAGGTCGTCGATGCGCAGGATGGTAATGGCCGCCTCGGTGGCGAATTTCAGACTCTTGGTTTTGACCATCGTGGGCTCGTACACACCCGCCTGCTTGTTATCCCTCGGCTTTCCGTTCACCAGATCCAAACCGATcctgcacacacaCACTTGAGGTTTTTGCGCTCGGGGTTGACCTGTGCTTCATTGTGAAAAGCTCGCAGTTTGGCCACCAGATCGGTGGAATCCTGCGCTGCGTTCACCGCCAACGTTTTAGGGATGACAAGCAACGAACGAGCAAACTCTGCAATTGCCAGCTGTTCCCGtgaACCATGCTGGTGGCGTAGTTCTCCAGGTAGATGGACAGAGCCGCCTCCACAGCGCCCCCTCCTGGGACCACAGATTTGGACTCCAGCACCCTCTTCACCACACACAGCGCATCGTGCAGCGAGCGCTCCATCTCGTCACACATGAAGTCGTTCGCTCCACGCAGGATTATAGAGGCTGAGGTGCGAGCCTTcgtactaacacac
>TU308609
CTGTTTATTtagataaatgaatcatgtgaacaGACAAATCAGTGGTACacaccacttcctgtttatttctttaaacaGATCAGAGAAAGTGAATTACAGGTCATTACGTGTCATTTATCAGCAAGCCGTGTTGCTGCAGtagcaaaaacaaatacaagCTAAGTGCATGGGCTAAGCTACAACCGCTATAACATGGTGGGATGTTAATAAATAcggagtgggcggggctttacTCCTCCAGAGAGCCTGACTGGACGGCGTCCTGGTACGAAGGCCCGCCCTCTTTAGGCTCAGGGAAGAGTTTGATGAGGTCGTCGATGCGCAGGATGGTAATGGCCGCCTCGGTGGCGAATTTCAGACTCTTGGTTTTGACCATCGTGGGCTCGTACACACCCGCCTGCTTGTTATCCCTCGGCTTTCCGTTCACCAGATCCAAACCGATcctgcacacacaacacacacacacacacacacacacacacacacacacacacacacacacacacagagttaataATCCCAATCACACACACGAAAAttcttagcttctaaCGTGCTCTACCTTTCTGACAGGGTTCCACACAGAACCACCACGGGACAATCACCTAACACCAACTCAGAGTTCTAGATCTGATCTTTCATTAGTTAATAGTCCCATTGTCTCATGTCATCTACTCCGATGTGATGCAATGCTCAGCAATGCTCATGTACaacttatttaaaaacacactttttttaatttttattttactttgttagtCCGAGGACAGAAACGACCTGAACTTGACAAGtaattatttactcatttaaaaatCCAAGTCATTTTGGCCTGAAGAGAACAGGAGGGTTAATAAACGGACGTGTGTGCGACTCGgagcacaacacaaacacagaagagagagtgtgtgagtgtgtatctgcGTACGAGGCTCTGAGTCAGCTCTGCTTTATCCCACGCgtataactgcacacacacaccgtcagcGTGGCAGCAATTGAAATGGGAAGACCTTAGTGCTGGGACAGAGGAGACGATTGCGCACCTTGCGAGCCGACGGTGCAGTTGAGGGCGTAACCGTTGACGAGGATGCTCTCCTTCTGACTGCGGCCGTGAGCCTTCAGCACGTTCACAGAGTTGATGGGGTAACGAGCCACGCCTTTAGCGTCCACGAACTTCACCGCCATGGCGGCGTCCACCACCATGTTAGCAAAGAAATCCGCATCACTGAAGGGTCAGGGGTCAAGGGTCAAACAGGGGTTACAgcgtttatacacacacacatacccac

Function

symbol description
tcp1 Predicted to enable unfolded protein binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be part of chaperonin-containing T-complex. Orthologous to human TCP1 (t-complex 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308608 False 819 lncRNA 0.52 3 24528252 24530820
TU308609 True 1289 lncRNA 0.48 4 24528252 24604059

Neighbor

gene id symbol gene type direction distance location
mdp1 mdp1 coding upstream 212785 24312226 ~ 24315467 (+)
cltrn tmem27 coding upstream 221591 24299596 ~ 24306661 (+)
LOC113530931 LOC108275754 coding upstream 339881 24166720 ~ 24188371 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding upstream 397145 24091122 ~ 24131107 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding upstream 472728 24048016 ~ 24055524 (+)
LOC113530697 NA coding downstream 14561 24618620 ~ 24623805 (+)
LOC113530267 LOC108275728 coding downstream 76561 24680620 ~ 24689895 (+)
aimp1b LOC108275725 coding downstream 88972 24693031 ~ 24698433 (+)
sgms2b LOC108275722 coding downstream 110958 24715017 ~ 24725235 (+)
LOC117599303 NA coding downstream 193170 24797229 ~ 24801608 (+)
G260632 LOC108275555 non-coding upstream 48452 24477566 ~ 24479800 (+)
G260592 NA non-coding upstream 97561 24405044 ~ 24430691 (+)
LOC113530917 NA non-coding upstream 176780 24348977 ~ 24351472 (+)
G260441 NA non-coding upstream 357223 24170370 ~ 24171029 (+)
G260409 NA non-coding upstream 366612 24158866 ~ 24161640 (+)
G260677 NA non-coding downstream 12109 24616168 ~ 24617217 (+)
LOC113530849 NA non-coding downstream 101228 24705287 ~ 24706115 (+)
G260691 NA non-coding downstream 121788 24725847 ~ 24728397 (+)
LOC117599308 NA non-coding downstream 131664 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 141722 24745781 ~ 24751808 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 74714 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 258985 24268577 ~ 24269267 (+)
G260415 NA other upstream 495528 24032227 ~ 24032724 (+)
G259993 NA other upstream 1138938 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 1144599 23371744 ~ 23383653 (+)
ddx58 ddx58 other downstream 20878 24624937 ~ 24636129 (+)

Expression


Co-expression Network