G260664


Basic Information

Item Value
gene id G260664
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24768922 ~ 24771134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308664
cattttttattcacaatgaGCAGAAACAATGTGGATTTACACagtgtgagaaacacacacacacacaactatttACACAACAATcttaaaatcctgtaaaaacaCAGTTTAATGATTACAGTATAAAGCAGTGTGCAGGTGCGTGTGGAGGCTTcagaataaatacacaccgtcGCTGATTTATCTGtgtgtttaatcagtttattaatctcagatttattctgatttaaatCTAAAAGACGCAATAATCAACgtttaaaaactttttacttgtacaaataacctgcaaTTTACGTAGATAACCGTCGAACTCACCTACTTAACCGTTAATCTTACCTAaaacacctttacacacacccTCGTCCACTTCAGaacgatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggatgatTTAGTGAATCAGAAAAAGAAgctaaacattaaataaagctaAGATGAACACTTCACATCTCAAACATTCGATAGCGTGAATTAAGATGGAGGACGAGTTCATTAATCACAGAGCGTCATTATTGGAACACGGCATGCTTATACAGGTGTGTAGTTTTAATATCAGTAATGTTTAATATACACTTTATAAAGCTGGGACGGAGTCATCCATTACACCAGTAATTAATAATGTACTGCAGGAGTGTcatgtgggagagagagagaagagaagagaaggggAGAATAGAGTAGGGGAGAGAAGAGTAGGGGAAAGAAGAAAaggggagagaagagaagaggaaagaagagaagaaaaggggagagaaggaggagaggagagaagagaacagaagaaaaggggagaggagagaagagaacagaagaaaaggggagaggagagaagtGAAGAGGGGGGAGAGGAGAGATGCTGTAGTGGTGGTGTGTGAGATCTGATCCGTCTCTGTAATGCAGAAcgtgtttataaaaatgaaactgcagtaaaaaaaaaaaaaactgataaaataaaGATCCTGAGAATAAGCTGAGAATAAACGCTACAGAGTGAGAtaaaacatcaacacacactaacactcctacatttacacacagaacgctgactgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagggaagGACCTGCAGTGTGAGTTGAGCTGTACTGTTTCCGTGGTAACCGCCTGTACTGATAATCAGTTTAGCGATATATCAGAGACGAgtcagagtgtcagagtgtgtttcagtcaggAGAAGAAGCTGTCTGATCATCTGTCTGATCATCTGTCTGATCATCTGTCTGATCATCTGTCTgatcatctgtctgtctactgTTCATATTTGAttaactgtctctctgtcattctttgTGCCCATGTGTCTGTCCACCTGagtgtctttctgtctgactTTCTGTCCATCTTTGCGTCTCTTACTTTATGCTGTTGTCTGTCCTTCTGTCATTCTATTTGCccgtttctgtctgtctgtctttctgtccatctctttgTCAGGTAGACatagtaagaaagaaagaaggaaagaaagaaagatgatcattctgtctctctacaCATCTTCCGgccttctgtctgtctttctatctcttcatctctctgtctccctgttattttatttgctaaTGCGTCTGTCTCGTTACGCATGTCTGCCGGTCCTCCATCCGTCCGTCCTTCTCTCAgtccgtccgtccgtccgtccTTCTCTCAGTCCGTCCGTCCGTCCTTCTCTCAgtccgtccgtccgtccgtccCGTCCTTCTCTCAGTCCGTCCTCTGATGTTTGTGGTGATGAATGACATTCTATTGTTTTAGATCAGTAGAATGTGATAATGCTGGAATACTGTGATGAaaatgttagtgtgttaatcTCAGGACACATCCAACAGAaatgagtgcgtgtgtgtgtgtgtgtgcgtgtacatgTCCCTGCTCAGCCAATCAGTAGTGATTTACAGTTCAGcagatttaaatataaatcacatttaaGTTTAAAACATGGTATACGATGAACGTCTAAAACACAGACGCAGACTCCCTCTTAACGAAAGGACCCTTAATGCTGTAAATGAGACAGAGCCGCAGTCCCGCTGTCCCGAGCAGGGGTTAGCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308664 True 2170 lncRNA 0.42 2 24768922 24771134

Neighbor

gene id symbol gene type direction distance location
sgms2b LOC108275722 coding upstream 43687 24715017 ~ 24725235 (+)
aimp1b LOC108275725 coding upstream 70489 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 79027 24680620 ~ 24689895 (+)
LOC113530697 NA coding upstream 145117 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 155833 24599158 ~ 24613089 (+)
LOC117599303 NA coding downstream 26095 24797229 ~ 24801608 (+)
LOC117599304 LOC108275642 coding downstream 30758 24801892 ~ 24802529 (+)
LOC117599305 NA coding downstream 32037 24803171 ~ 24804413 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 36383 24807517 ~ 24826683 (+)
txk LOC108275609 coding downstream 85446 24856580 ~ 24868832 (+)
G260697 NA non-coding upstream 17114 24745781 ~ 24751808 (+)
LOC117599308 NA non-coding upstream 32549 24735723 ~ 24736373 (+)
G260691 NA non-coding upstream 40525 24725847 ~ 24728397 (+)
LOC113530849 NA non-coding upstream 62807 24705287 ~ 24706115 (+)
G260677 NA non-coding upstream 151705 24616168 ~ 24617217 (+)
G260705 NA non-coding downstream 3381 24774515 ~ 24775224 (+)
G260711 NA non-coding downstream 34822 24805956 ~ 24806167 (+)
G260713 NA non-coding downstream 56189 24827323 ~ 24829045 (+)
G260718 NA non-coding downstream 58646 24829780 ~ 24830030 (+)
G260725 NA non-coding downstream 67281 24838415 ~ 24839487 (+)
ddx58 ddx58 other upstream 132793 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 315384 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 499655 24268577 ~ 24269267 (+)
G260415 NA other upstream 736198 24032227 ~ 24032724 (+)
G259993 NA other upstream 1379608 23387538 ~ 23389314 (+)

Expression


Co-expression Network