G260677


Basic Information

Item Value
gene id G260677
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24616168 ~ 24617217 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308680
cacttcaggttAGTGatcagtttaattttaatttaattgaaatatgtttaataaacagtaataaacacctctaacagcacgtccccaagtgttttattcctcttattccacagcagcGTAACAACAAGAACAATGTTTTgcgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtatccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtttgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtccgtgtgaaggagtgtgtgtccgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtcccttGTAGAGAATGGAGTCCCATAATTCTGTGCGCAGGACAAGgagttccacacacacacacacacacacactttgtggcTGTAAGTCcgtctcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgcctCCTTCACGTCTGTGTGTCGATTCTCTTCTCCAGCTCCCACTGTGCAGCTACACGAGCGCCGTAGATCACAAACCCCCAGGACACCAACACCACCAGCCACAcgatctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagt
>TU308681
cacttcaggttAGTGatcagtttaattttaatttaattgaaatatgtttaataaacagtaataaacacctctaacagcacgtccccaagtgttttattcctcttattccacagcagcGTAACAACAAGAACAATGTTTTgcgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtatccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtccgtgtgaaggagtgtgtgtccgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtcccttGTAGAGAATGGAGTCCCATAATTCTGTGCGCAGGACAAGgagttccacacacacacacacacacacactttgtggcTGTAAGTCcgtctcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgcctCCTTCACGTCTGTGTGTCGATTCTCTTCTCCAGCTCCCACTGTGCAGCTACACGAGCGCCGTAGATCACAAACCCCCAGGACACCAACACCACCAGCCACAcgatctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagt
>TU308682
cacttcaggttAGTGatcagtttaattttaatttaattgaaatatgtttaataaacagtaataaacacctctaacagcacgtccccaagtgttttattcctcttattccacagcagcGTAACAACAAGAACAATGTTTTgcgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtctgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtcccttGTAGAGAATGGAGTCCCATAATTCTGTGCGCAGGACAAGgagttccacacacacacacacacacacactttgtggcTGTAAGTCcgtctcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgcctCCTTCACGTCTGTGTGTCGATTCTCTTCTCCAGCTCCCACTGTGCAGCTACACGAGCGCCGTAGATCACAAACCCCCAGGACACCAACACCACCAGCCACAcgatctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagt
>TU308684
cacttcaggttAGTGatcagtttaattttaatttaattgaaatatgtttaataaacagtaataaacacctctaacagcacgtccccaagtgttttattcctcttattccacagcagcGTAACAACAAGAACAATGTTTTgcgaaggagtgtgtgtgtgtccgtgtgaaggagagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtatccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtctgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtccgtgtgaaggagtgtgtgtccgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtcccttGTAGAGAATGGAGTCCCATAATTCTGTGCGCAGGACAAGgagttccacacacacacacacacacacactttgtggcTGTAAGTCcgtctcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgcctCCTTCACGTCTGTGTGTCGATTCTCTTCTCCAGCTCCCACTGTGCAGCTACACGAGCGCCGTAGATCACAAACCCCCAGGACACCAACACCACCAGCCACAcgatctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagt
>TU308685
cacttcaggttAGTGatcagtttaattttaatttaattgaaatatgtttaataaacagtaataaacacctctaacagcacgtccccaagtgttttattcctcttattccacagcagcGTAACAACAAGAACAATGTTTTgcgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtatccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtcccttGTAGAGAATGGAGTCCCATAATTCTGTGCGCAGGACAAGgagttccacacacacacacacacacacactttgtggcTGTAAGTCcgtctcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgcctCCTTCACGTCTGTGTGTCGATTCTCTTCTCCAGCTCCCACTGTGCAGCTACACGAGCGCCGTAGATCACAAACCCCCAGGACACCAACACCACCAGCCACAcgatctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308680 False 757 lncRNA 0.49 3 24616168 24617217
TU308681 True 897 lncRNA 0.50 3 24616168 24617217
TU308682 False 667 lncRNA 0.49 3 24616168 24617217
TU308684 False 881 lncRNA 0.50 4 24616168 24617217
TU308685 False 843 lncRNA 0.50 3 24616168 24617217

Neighbor

gene id symbol gene type direction distance location
LOC117599218 LOC108275604,LOC102207396 coding upstream 3079 24599158 ~ 24613089 (+)
LOC113530532 LOC108275719 coding upstream 87253 24520879 ~ 24528915 (+)
mdp1 mdp1 coding upstream 300701 24312226 ~ 24315467 (+)
cltrn tmem27 coding upstream 309507 24299596 ~ 24306661 (+)
LOC113530931 LOC108275754 coding upstream 427797 24166720 ~ 24188371 (+)
LOC113530697 NA coding downstream 1403 24618620 ~ 24623805 (+)
LOC113530267 LOC108275728 coding downstream 63403 24680620 ~ 24689895 (+)
aimp1b LOC108275725 coding downstream 75814 24693031 ~ 24698433 (+)
sgms2b LOC108275722 coding downstream 97800 24715017 ~ 24725235 (+)
LOC117599303 NA coding downstream 180012 24797229 ~ 24801608 (+)
G260623 tcp1 non-coding upstream 12109 24528252 ~ 24604059 (+)
LOC117599259 NA non-coding upstream 87253 24523258 ~ 24528915 (+)
G260632 LOC108275555 non-coding upstream 136368 24477566 ~ 24479800 (+)
G260592 NA non-coding upstream 185477 24405044 ~ 24430691 (+)
LOC113530917 NA non-coding upstream 264696 24348977 ~ 24351472 (+)
LOC113530849 NA non-coding downstream 88070 24705287 ~ 24706115 (+)
G260691 NA non-coding downstream 108630 24725847 ~ 24728397 (+)
LOC117599308 NA non-coding downstream 118506 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 128564 24745781 ~ 24751808 (+)
G260664 NA non-coding downstream 151705 24768922 ~ 24771134 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 162630 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 346901 24268577 ~ 24269267 (+)
G260415 NA other upstream 583444 24032227 ~ 24032724 (+)
G259993 NA other upstream 1226854 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 1232515 23371744 ~ 23383653 (+)
ddx58 ddx58 other downstream 7720 24624937 ~ 24636129 (+)

Expression


Co-expression Network